Scaffold Ga0164294_10006428

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10006428
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10065
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031852	Metagenome	181	Y
F050987	Metagenome / Metatranscriptome	144	Y
F071989	Metagenome	121	N
F085232	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000642815	F050987	N/A	MKAHQTITDVLMDINTPETAKKFVVITDHENTFYFSYPGEDEFEAMRGQDFLTRTFIPLSISVHQEVGSHFVYKWDTMNEVVNHFDLLFNS*
Ga0164294_1000642824	F031852	N/A	MEVYLGKQAKSLFYGRDIPIDSIGVFQSHVGEWLYWFNDGWTYDTGFADTEVEAMETAKRNFKARKKSNDEEAI*
Ga0164294_1000642825	F085232	N/A	MKKLFKTREIQRTGDLAPTGVRSTIKGTYEFNEVFDHIFNEARKPDASWKNN*
Ga0164294_100064283	F071989	N/A	MNRAMIGQESISVIERLAALCATPGIDDKTKEIANKQIQELLSGPVQISVLELKTAAAGIVTLS*