Scaffold Ga0164294_10005647

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10005647
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10752
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002935	Metagenome	519	Y
F003422	Metagenome / Metatranscriptome	487	Y
F003663	Metagenome / Metatranscriptome	474	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006984	Metagenome / Metatranscriptome	360	Y
F017134	Metagenome / Metatranscriptome	242	Y
F079977	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100056471	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQETYGMGDVSSSGFPTKIKLVEYNNPVFAFQNIHSYKDDGI
Ga0164294_1000564710	F005741	AGGA	MKNRFRIEIYDANKANDLTLYSEQGVDREYLNELVFSNIRRFNGRVNAYVFDNQKKKKVTAMFLDETIANKFQTV*
Ga0164294_1000564715	F003663	AGGTGG	MLSTATALLDATRDSIFDEDIMGLAGELHTRRNELTDEIFAKYLFMYSSALSAKVADSITKVLLTEKEMSDLCATIDELDNLTETILEENE*
Ga0164294_1000564718	F017134	GAGG	MELFTVACLNYEICGAKETFDSVEDYEIYGDDWMCGECYDSDEMSFFGWDMDADALASAGHGMDEDY*
Ga0164294_1000564719	F079977	GAG	MEILAQWHPDGDFTEEDLWDAIAESEGVDVNEISDRDLTEFI*
Ga0164294_100056472	F001125	AGGCGG	MGDRANFGFRQSNENVVFLYGHWAGYEMLLKLAEAVAAARPRWSDESYATRIAISQLVGQDWNSETGWGLYVNQIGDNEHKIPVIDWANQTFTLYEEDLETKVFSMPLLDFCTKYSQLIMV*
Ga0164294_100056474	F001043	AGGAG	MSDYKDGFDDGYKFAREEMMEKLSEIDITDIDTWILDRLCEMIEGGKL*
Ga0164294_100056476	F003422	N/A	MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATLQPNNQTKEEKMEETTIGSDALHSPAVEYNPNLLVTYKVLHGYSDPEYTTSKVASLEWDLHNGRQSQKQASMYASKINTVKDIILEAYAESEDQETLQAIAEALSIELTKDIQFTATIEVSGTITLDLLEDYDLDSEITEALYVDANNGNIQIDDTEVCHVRESY*
Ga0164294_100056477	F002935	GGA	MSVGSAIILLYNERNKMDRRESRMNGYTGTIVDGKKLAEIANGIYALQYSNEFSKCTVDNLLFIELEEKNVYGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTDKTEDIADYIRIFGDRLDRNCSLWQSKMSVAPATILA*