Scaffold Ga0164294_10000606

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10000606
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34155
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (84.62%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008183	Metagenome / Metatranscriptome	337	Y
F009393	Metagenome / Metatranscriptome	318	Y
F025940	Metagenome	199	Y
F051929	Metagenome / Metatranscriptome	143	Y
F053131	Metagenome	141	Y
F058801	Metagenome	134	Y
F074583	Metagenome	119	Y
F093537	Metagenome	106	N
F103122	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000060613	F051929	GGGGG	MTEQRYFSGGQEFLYPHAGDPKPPSNTKVLLLSKGGICTVGYWGATWCIGWLPLPKRNMEKEDERHT*
Ga0164294_1000060618	F008183	AGG	MLETDLMAEGTEIDLVKYGVLWQKVQDMDKKVDKMERNVEELLALANKGKGGLWFGMTVVSGVSVVVGYFISIWKH*
Ga0164294_1000060619	F009393	N/A	LGDNLNLKETIMSTNSQIAFTPTGKTIVVASTTSAPTGIQAPVYAKFDPQNAGQYRFINNGTATVFLGTGNTAAEATANAVAPTAGSPTAAIVLVPGAVEILRFNKDTFFSGLSSSAATVYITPGQGL*
Ga0164294_1000060620	F053131	AGGA	MQFKWTVNKVQVVENNLVTRVDLTVTATDGDNNASAVYTCNLVRGDSFIPYDQLTEQQVLDWCFEPVVETWLDINNVEQSTTRLLKGNGETQVAGQIARQVAQAAAEPALPWVTI*
Ga0164294_1000060631	F025940	N/A	MATAAPYSRKLNLTRDQLAQFLTDQQQIRQFELLFSVADAAQYIPDEVNEAKLEAGSAQATANDALAQLTRLAQSLELLALAPVRNNIELAHDVNGILPYANQTASVRSNQVLTWLTM*
Ga0164294_1000060645	F074583	AGG	MTNQRETPNFATWQHSNLAKFATEVYIRLQDEQAANEQLRLDLKDAMKLARKQFLGDNAA
Ga0164294_1000060648	F103122	AGGAG	MMTLEQIRHALYDRMPMKVADATGIHYNTIRKVRDDPKANPTHKVLLALSTYLESRKVTHG*
Ga0164294_100006065	F093537	AGGA	MNEKIKDRYMTIRLPAEVERELRKMAEHSTRTLAAQILHYVKLGLSSESQAK*
Ga0164294_100006069	F058801	AGGTGG	MKPSHYTTPRNYADCTWVQSYGRKASVWPGYALAFAIGVGLAALLVAWWSS*