NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10000606

Scaffold Ga0164294_10000606


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10000606 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34155
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (84.62%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008183Metagenome / Metatranscriptome337Y
F009393Metagenome / Metatranscriptome318Y
F025940Metagenome199Y
F051929Metagenome / Metatranscriptome143Y
F053131Metagenome141Y
F058801Metagenome134Y
F074583Metagenome119Y
F093537Metagenome106N
F103122Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1000060613F051929GGGGGMTEQRYFSGGQEFLYPHAGDPKPPSNTKVLLLSKGGICTVGYWGATWCIGWLPLPKRNMEKEDERHT*
Ga0164294_1000060618F008183AGGMLETDLMAEGTEIDLVKYGVLWQKVQDMDKKVDKMERNVEELLALANKGKGGLWFGMTVVSGVSVVVGYFISIWKH*
Ga0164294_1000060619F009393N/ALGDNLNLKETIMSTNSQIAFTPTGKTIVVASTTSAPTGIQAPVYAKFDPQNAGQYRFINNGTATVFLGTGNTAAEATANAVAPTAGSPTAAIVLVPGAVEILRFNKDTFFSGLSSSAATVYITPGQGL*
Ga0164294_1000060620F053131AGGAMQFKWTVNKVQVVENNLVTRVDLTVTATDGDNNASAVYTCNLVRGDSFIPYDQLTEQQVLDWCFEPVVETWLDINNVEQSTTRLLKGNGETQVAGQIARQVAQAAAEPALPWVTI*
Ga0164294_1000060631F025940N/AMATAAPYSRKLNLTRDQLAQFLTDQQQIRQFELLFSVADAAQYIPDEVNEAKLEAGSAQATANDALAQLTRLAQSLELLALAPVRNNIELAHDVNGILPYANQTASVRSNQVLTWLTM*
Ga0164294_1000060645F074583AGGMTNQRETPNFATWQHSNLAKFATEVYIRLQDEQAANEQLRLDLKDAMKLARKQFLGDNAA
Ga0164294_1000060648F103122AGGAGMMTLEQIRHALYDRMPMKVADATGIHYNTIRKVRDDPKANPTHKVLLALSTYLESRKVTHG*
Ga0164294_100006065F093537AGGAMNEKIKDRYMTIRLPAEVERELRKMAEHSTRTLAAQILHYVKLGLSSESQAK*
Ga0164294_100006069F058801AGGTGGMKPSHYTTPRNYADCTWVQSYGRKASVWPGYALAFAIGVGLAALLVAWWSS*

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