Basic Information | |
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Taxon OID | 3300013006 Open in IMG/M |
Scaffold ID | Ga0164294_10000606 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34155 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (84.62%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008183 | Metagenome / Metatranscriptome | 337 | Y |
F009393 | Metagenome / Metatranscriptome | 318 | Y |
F025940 | Metagenome | 199 | Y |
F051929 | Metagenome / Metatranscriptome | 143 | Y |
F053131 | Metagenome | 141 | Y |
F058801 | Metagenome | 134 | Y |
F074583 | Metagenome | 119 | Y |
F093537 | Metagenome | 106 | N |
F103122 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164294_1000060613 | F051929 | GGGGG | MTEQRYFSGGQEFLYPHAGDPKPPSNTKVLLLSKGGICTVGYWGATWCIGWLPLPKRNMEKEDERHT* |
Ga0164294_1000060618 | F008183 | AGG | MLETDLMAEGTEIDLVKYGVLWQKVQDMDKKVDKMERNVEELLALANKGKGGLWFGMTVVSGVSVVVGYFISIWKH* |
Ga0164294_1000060619 | F009393 | N/A | LGDNLNLKETIMSTNSQIAFTPTGKTIVVASTTSAPTGIQAPVYAKFDPQNAGQYRFINNGTATVFLGTGNTAAEATANAVAPTAGSPTAAIVLVPGAVEILRFNKDTFFSGLSSSAATVYITPGQGL* |
Ga0164294_1000060620 | F053131 | AGGA | MQFKWTVNKVQVVENNLVTRVDLTVTATDGDNNASAVYTCNLVRGDSFIPYDQLTEQQVLDWCFEPVVETWLDINNVEQSTTRLLKGNGETQVAGQIARQVAQAAAEPALPWVTI* |
Ga0164294_1000060631 | F025940 | N/A | MATAAPYSRKLNLTRDQLAQFLTDQQQIRQFELLFSVADAAQYIPDEVNEAKLEAGSAQATANDALAQLTRLAQSLELLALAPVRNNIELAHDVNGILPYANQTASVRSNQVLTWLTM* |
Ga0164294_1000060645 | F074583 | AGG | MTNQRETPNFATWQHSNLAKFATEVYIRLQDEQAANEQLRLDLKDAMKLARKQFLGDNAA |
Ga0164294_1000060648 | F103122 | AGGAG | MMTLEQIRHALYDRMPMKVADATGIHYNTIRKVRDDPKANPTHKVLLALSTYLESRKVTHG* |
Ga0164294_100006065 | F093537 | AGGA | MNEKIKDRYMTIRLPAEVERELRKMAEHSTRTLAAQILHYVKLGLSSESQAK* |
Ga0164294_100006069 | F058801 | AGGTGG | MKPSHYTTPRNYADCTWVQSYGRKASVWPGYALAFAIGVGLAALLVAWWSS* |
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