NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F093537

Metagenome Family F093537

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093537
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 54 residues
Representative Sequence MATDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA
Number of Associated Samples 73
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 86.79 %
% of genes near scaffold ends (potentially truncated) 13.21 %
% of genes from short scaffolds (< 2000 bps) 69.81 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.377 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment
(30.189 % of family members)
Environment Ontology (ENVO) Unclassified
(33.962 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(32.075 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 85.45%    β-sheet: 0.00%    Coil/Unstructured: 14.55%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF08774VRR_NUC 30.19
PF08291Peptidase_M15_3 5.66
PF11351GTA_holin_3TM 2.83
PF04851ResIII 1.89
PF12708Pectate_lyase_3 1.89
PF00271Helicase_C 1.89
PF13229Beta_helix 1.89
PF07460NUMOD3 0.94
PF01381HTH_3 0.94
PF11195DUF2829 0.94
PF13479AAA_24 0.94
PF01022HTH_5 0.94
PF11134Phage_stabilise 0.94
PF11650P22_Tail-4 0.94
PF04466Terminase_3 0.94
PF11651P22_CoatProtein 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A60.38 %
All OrganismsrootAll Organisms39.62 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002408|B570J29032_109597510Not Available917Open in IMG/M
3300002408|B570J29032_109860827All Organisms → cellular organisms → Bacteria1728Open in IMG/M
3300002835|B570J40625_100002595All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage33710Open in IMG/M
3300002835|B570J40625_100006453All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage21740Open in IMG/M
3300002845|contig_10183All Organisms → cellular organisms → Bacteria1294Open in IMG/M
3300003277|JGI25908J49247_10041391Not Available1242Open in IMG/M
3300003394|JGI25907J50239_1033488Not Available1091Open in IMG/M
3300004457|Ga0066224_1045852Not Available1112Open in IMG/M
3300004481|Ga0069718_10064954All Organisms → cellular organisms → Bacteria1140Open in IMG/M
3300004481|Ga0069718_15981007All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300004481|Ga0069718_16183588All Organisms → cellular organisms → Bacteria → Proteobacteria687Open in IMG/M
3300005662|Ga0078894_11753312All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300006033|Ga0075012_10000760Not Available33790Open in IMG/M
3300006802|Ga0070749_10074808All Organisms → cellular organisms → Bacteria2027Open in IMG/M
3300006805|Ga0075464_10509984All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300006805|Ga0075464_10858131All Organisms → cellular organisms → Bacteria → Proteobacteria566Open in IMG/M
3300006920|Ga0070748_1082897All Organisms → cellular organisms → Bacteria1237Open in IMG/M
3300006920|Ga0070748_1158937All Organisms → cellular organisms → Bacteria838Open in IMG/M
3300007708|Ga0102859_1064613All Organisms → Viruses → Predicted Viral1028Open in IMG/M
3300007734|Ga0104986_1655Not Available21236Open in IMG/M
3300008266|Ga0114363_1000255All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage35041Open in IMG/M
3300008266|Ga0114363_1000365All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage29666Open in IMG/M
3300008267|Ga0114364_1048503Not Available1538Open in IMG/M
3300008448|Ga0114876_1003070All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes11379Open in IMG/M
3300008448|Ga0114876_1199239All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage677Open in IMG/M
3300009009|Ga0105105_10266759Not Available913Open in IMG/M
3300009009|Ga0105105_10369014Not Available793Open in IMG/M
3300009009|Ga0105105_10380723Not Available782Open in IMG/M
3300009009|Ga0105105_10776438Not Available577Open in IMG/M
3300009009|Ga0105105_10944487Not Available532Open in IMG/M
3300009026|Ga0102829_1137386Not Available778Open in IMG/M
3300009037|Ga0105093_10308564Not Available844Open in IMG/M
3300009081|Ga0105098_10064258Not Available1521Open in IMG/M
3300009081|Ga0105098_10225265Not Available875Open in IMG/M
3300009081|Ga0105098_10325515Not Available745Open in IMG/M
3300009081|Ga0105098_10658057Not Available552Open in IMG/M
3300009082|Ga0105099_10061138All Organisms → Viruses → Predicted Viral2003Open in IMG/M
3300009082|Ga0105099_10319974Not Available912Open in IMG/M
3300009082|Ga0105099_10416783Not Available803Open in IMG/M
3300009085|Ga0105103_10080389All Organisms → Viruses → Predicted Viral1676Open in IMG/M
3300009085|Ga0105103_10113259Not Available1416Open in IMG/M
3300009165|Ga0105102_10052745All Organisms → cellular organisms → Bacteria1794Open in IMG/M
3300009165|Ga0105102_10114105Not Available1282Open in IMG/M
3300009165|Ga0105102_10234722Not Available929Open in IMG/M
3300009165|Ga0105102_10370919Not Available755Open in IMG/M
3300009168|Ga0105104_10031090All Organisms → Viruses → Predicted Viral3003Open in IMG/M
3300009169|Ga0105097_10049854Not Available2254Open in IMG/M
3300009169|Ga0105097_10205274All Organisms → Viruses → Predicted Viral1085Open in IMG/M
3300009169|Ga0105097_10733785Not Available560Open in IMG/M
3300009170|Ga0105096_10250873Not Available899Open in IMG/M
3300009170|Ga0105096_10389466Not Available717Open in IMG/M
3300009419|Ga0114982_1009626Not Available3452Open in IMG/M
3300010368|Ga0129324_10203074All Organisms → cellular organisms → Bacteria804Open in IMG/M
3300010374|Ga0114986_1013887Not Available1569Open in IMG/M
3300010970|Ga0137575_10033432Not Available823Open in IMG/M
3300011009|Ga0129318_10030436All Organisms → cellular organisms → Bacteria1280Open in IMG/M
3300011115|Ga0151514_10922Not Available11819Open in IMG/M
3300011339|Ga0153700_10510All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage19097Open in IMG/M
3300011339|Ga0153700_10563All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage18290Open in IMG/M
3300012664|Ga0157497_1005178All Organisms → Viruses → Predicted Viral2068Open in IMG/M
3300012964|Ga0153916_13327351Not Available505Open in IMG/M
3300013006|Ga0164294_10000606All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage34155Open in IMG/M
3300017722|Ga0181347_1151104Not Available634Open in IMG/M
3300017777|Ga0181357_1283509Not Available567Open in IMG/M
3300019784|Ga0181359_1079069Not Available1235Open in IMG/M
3300019784|Ga0181359_1103483Not Available1041Open in IMG/M
3300019784|Ga0181359_1108363Not Available1010Open in IMG/M
3300020048|Ga0207193_1008981All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage14530Open in IMG/M
3300020048|Ga0207193_1322013Not Available1083Open in IMG/M
3300020159|Ga0211734_11226911Not Available1733Open in IMG/M
3300020205|Ga0211731_11470671All Organisms → cellular organisms → Bacteria2636Open in IMG/M
3300020506|Ga0208091_1034541All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage559Open in IMG/M
3300022407|Ga0181351_1000167All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage17284Open in IMG/M
3300024348|Ga0244776_10451284Not Available841Open in IMG/M
3300025889|Ga0208644_1018261Not Available4499Open in IMG/M
3300027693|Ga0209704_1179774Not Available616Open in IMG/M
3300027693|Ga0209704_1236032Not Available534Open in IMG/M
3300027710|Ga0209599_10028937Not Available1516Open in IMG/M
3300027721|Ga0209492_1127419Not Available893Open in IMG/M
3300027721|Ga0209492_1183601Not Available722Open in IMG/M
3300027762|Ga0209288_10000760All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage9623Open in IMG/M
3300027762|Ga0209288_10132275Not Available796Open in IMG/M
3300027764|Ga0209134_10123359Not Available891Open in IMG/M
3300027785|Ga0209246_10011640All Organisms → Viruses → Predicted Viral3265Open in IMG/M
3300027792|Ga0209287_10303652Not Available612Open in IMG/M
3300028025|Ga0247723_1001439All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage13938Open in IMG/M
3300028025|Ga0247723_1008308Not Available4301Open in IMG/M
(restricted) 3300028581|Ga0247840_10086063All Organisms → cellular organisms → Bacteria2150Open in IMG/M
3300031566|Ga0307378_11107626All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage635Open in IMG/M
3300031578|Ga0307376_10029106Not Available4206Open in IMG/M
3300031758|Ga0315907_10764084Not Available726Open in IMG/M
3300032046|Ga0315289_10006101Not Available17746Open in IMG/M
3300033993|Ga0334994_0000073All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage67264Open in IMG/M
3300033993|Ga0334994_0117780Not Available1536Open in IMG/M
3300033996|Ga0334979_0420112Not Available736Open in IMG/M
3300034012|Ga0334986_0260496Not Available938Open in IMG/M
3300034018|Ga0334985_0073582Not Available2473Open in IMG/M
3300034020|Ga0335002_0225822Not Available1144Open in IMG/M
3300034022|Ga0335005_0000380All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage34463Open in IMG/M
3300034063|Ga0335000_0808203Not Available504Open in IMG/M
3300034066|Ga0335019_0426812Not Available805Open in IMG/M
3300034093|Ga0335012_0599834Not Available509Open in IMG/M
3300034104|Ga0335031_0171359All Organisms → Viruses → Predicted Viral1488Open in IMG/M
3300034109|Ga0335051_0280647Not Available812Open in IMG/M
3300034112|Ga0335066_0656026Not Available535Open in IMG/M
3300034119|Ga0335054_0015657All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4620Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment30.19%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater15.09%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake10.38%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous5.66%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater3.77%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment2.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater2.83%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton2.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater2.83%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.83%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface2.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.89%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.89%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment1.89%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.89%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.89%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment1.89%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.94%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.94%
WatershedsEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Watersheds0.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.94%
Stormwater Retention PondEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond0.94%
Pond Fresh WaterEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water0.94%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300002845Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim DellEnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300004481Combined Assembly of Gp0112041, Gp0112042, Gp0112043EnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006033Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007708Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02EnvironmentalOpen in IMG/M
3300007734Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015JanEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300009009Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009037Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009082Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300009085Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009165Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009170Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300009419Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FTEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010374Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17EnvironmentalOpen in IMG/M
3300010970Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016EnvironmentalOpen in IMG/M
3300011009Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNAEnvironmentalOpen in IMG/M
3300011115Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016MayEnvironmentalOpen in IMG/M
3300011339Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - HannamEnvironmentalOpen in IMG/M
3300012664Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17EnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020506Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027693Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027721Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027762Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027764Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027792Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028581 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17mEnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034020Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055EnvironmentalOpen in IMG/M
3300034022Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058EnvironmentalOpen in IMG/M
3300034063Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034109Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158EnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M
3300034119Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B570J29032_10959751043300002408FreshwaterMATAKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQ
B570J29032_10986082763300002408FreshwaterMSTSKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQ
B570J40625_100002595333300002835FreshwaterMATAKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQEAKA*
B570J40625_10000645363300002835FreshwaterMSTSKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
contig_1018323300002845Stormwater Retention PondMSSVQRRHHEHSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQETKA*
JGI25908J49247_1004139143300003277Freshwater LakeMATSKIKDRYMTIRLPADKXEIELRKMAERNTRTLAAQILHCVKMEMERQQVKVPQQANA
JGI25907J50239_103348843300003394Freshwater LakeMATSKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMEMERQQVKVPQQANA*
Ga0066224_104585233300004457MarineMATAKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQETKA*
Ga0069718_1006495423300004481SedimentMTSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQEVK*
Ga0069718_1598100723300004481SedimentMSEKIKDRYMTIRLPADIERELRKMAEANTRTLAAQILHCVKMEMERQQSQEVK*
Ga0069718_1618358813300004481SedimentMSTSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMER
Ga0078894_1175331213300005662Freshwater LakeMTAKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
Ga0075012_10000760373300006033WatershedsMTTTKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
Ga0070749_1007480843300006802AqueousMSTSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQEVK*
Ga0075464_1050998413300006805AqueousMATAKIKDCYMTIRLPADVERELRKMAERNTRTLAAQILHCVKMELERQQAQEVK*
Ga0075464_1085813123300006805AqueousMNEKIKDRYMTVRLPADVEMLLRKHAQESTRTLAAQILHYVKLGLSSEPQAK*
Ga0070748_108289743300006920AqueousMNEKIKDRYMTVRLPADVEMLLRKHAQESTRTLAAQILHYVKLGLSSESQAK*
Ga0070748_115893713300006920AqueousMPTDKIKDRYMTLRLPADVERDLRKMAEADTRTLAAQILHCIKLEMARQQALEAKARDNSITKT
Ga0102859_106461323300007708EstuarineMPTDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKS*
Ga0104986_1655143300007734FreshwaterMATAKIKDRYMTIRLPADVERELRKMAERNTRTLAAQILHCVKMEMERQQALEAKA*
Ga0114363_1000255433300008266Freshwater, PlanktonMPTDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA*
Ga0114363_100036573300008266Freshwater, PlanktonMATTKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
Ga0114364_104850343300008267Freshwater, PlanktonMSTDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCSKLELARQSEKVKA*
Ga0114876_1003070183300008448Freshwater LakeMATAKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
Ga0114876_119923913300008448Freshwater LakeMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMEMERQQVKVPQQANA*
Ga0105105_1026675943300009009Freshwater SedimentMAAEIKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA*
Ga0105105_1036901423300009009Freshwater SedimentMSTDKIKDRYMTLRLPADVEIELRKMAEANTRTLAAQILHCIKLELARQEKGVKA*
Ga0105105_1038072323300009009Freshwater SedimentMSTDKIKDRYMTLRLPADVEIELRKMAEANTRTLAAQILHCIKLELARQSEKVKA*
Ga0105105_1077643813300009009Freshwater SedimentMSTDKIKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA*
Ga0105105_1094448723300009009Freshwater SedimentMTTAVKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQEKVKA*
Ga0102829_113738623300009026EstuarineMTVRLPADVEILLRKHAQESTRTLAAQILHYVKLGLSSESQAK*
Ga0105093_1030856433300009037Freshwater SedimentMPTDKIKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQEKVKA*
Ga0105098_1006425833300009081Freshwater SedimentMTEKVKDRYMTMRLPADVERELRKMAEANTRTLAAQILHYVKMGLQVEKK*
Ga0105098_1022526513300009081Freshwater SedimentKDRYMTVRLPADVEILLRKHAQESTRTLAAQILHYVKLGLSSESQAK*
Ga0105098_1032551533300009081Freshwater SedimentMPTDKIKDRYMTLRLPADVEIELRKMAEANTRTLAAQILHCIKLELARQIARDKA
Ga0105098_1065805713300009081Freshwater SedimentKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA*
Ga0105099_1006113823300009082Freshwater SedimentMTEKIKDRYMTLRLPADVEVELRRMADENTRTLAAQILHCIKLELARQSEKVKA*
Ga0105099_1031997433300009082Freshwater SedimentMSTEKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA*
Ga0105099_1041678333300009082Freshwater SedimentMSTEKIKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQEKVKA*
Ga0105103_1008038953300009085Freshwater SedimentMTTAVKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA*
Ga0105103_1011325923300009085Freshwater SedimentMTTIIKDRYMTVRLPADVEMLLRKHAQESTRTLAAQILHYVKLGLSSESQAK*
Ga0105102_1005274553300009165Freshwater SedimentMTTSVKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA*
Ga0105102_1011410533300009165Freshwater SedimentMPTDKIKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA*
Ga0105102_1023472213300009165Freshwater SedimentMTEKIKDRYMTLRLPADVEAELRRMAEANTRTLAAQILHCIKLELARQFARDKA*
Ga0105102_1037091933300009165Freshwater SedimentMTEKIKDRYMTLRLPADVEVELRRMAEANTRTLAAQILHCIKLELARQFARDKA*
Ga0105104_1003109023300009168Freshwater SedimentMPTDKIKDRYMTLRLPADVEIELRKMAEANTRTLAAQILHCIKLELARQSEKEKA*
Ga0105097_1004985473300009169Freshwater SedimentMSEKIKDRYMTVRLPADVEMLLRKHAQESTRTLAAQILHYVKLGLSSESQAK*
Ga0105097_1020527423300009169Freshwater SedimentMTEKVKDRYMTMRLPADVERELRKMAEANTRTLAAQILHYVKMGLQIEKK*
Ga0105097_1073378523300009169Freshwater SedimentFEGLYMAWLLPADVEMGVRKMAEENTGTLAAQSRHCFKLELARQSEKVKA*
Ga0105096_1025087343300009170Freshwater SedimentMTTKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
Ga0105096_1038946633300009170Freshwater SedimentGRTMTTAVKDRYMTIRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA*
Ga0114982_100962673300009419Deep SubsurfaceMTSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQETKA*
Ga0129324_1020307423300010368Freshwater To Marine Saline GradientMTEKIKDRYMTVRLPADFERDLRKHAETNTRTLAAQILHYVKSGLAKETK*
Ga0114986_101388753300010374Deep SubsurfaceMATSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
Ga0137575_1003343233300010970Pond Fresh WaterMATSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQETKA*
Ga0129318_1003043643300011009Freshwater To Marine Saline GradientMTSKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
Ga0151514_10922163300011115FreshwaterMATSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQALEAKA*
Ga0153700_10510303300011339FreshwaterMNEKIKDRYMTVRLPVDVEMLLRKHAQESTRTLAAQILHYVKLGLSSESQAK*
Ga0153700_10563333300011339FreshwaterMATSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQEVK*
Ga0157497_100517823300012664FreshwaterMATDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA*
Ga0153916_1332735113300012964Freshwater WetlandsMPTDKIKDCYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA*
Ga0164294_1000060653300013006FreshwaterMNEKIKDRYMTIRLPAEVERELRKMAEHSTRTLAAQILHYVKLGLSSESQAK*
Ga0181347_115110433300017722Freshwater LakeMTDKIKERYMTLRLPADVEIELRKMADENTRTLAAQILHCIKLELARQSKKVKA
Ga0181357_128350923300017777Freshwater LakeMDTAKIKDRYMTIRLPADVERELRKMAERNTRTLAAQILHCVKMEMERGHGKSN
Ga0181359_107906923300019784Freshwater LakeMTAKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA
Ga0181359_110348323300019784Freshwater LakeMSTDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA
Ga0181359_110836333300019784Freshwater LakeMATSKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMEMERQQVKVPQQANA
Ga0207193_1008981273300020048Freshwater Lake SedimentMTEKVKDRYMTMRLPADVERELRKMAEANTRTLAAQILHYVKMGLQVEKK
Ga0207193_132201333300020048Freshwater Lake SedimentMNEKIKDRYMTVRLPADVEMLLRKHAQESTRTLAAQILHYVKLGLSSESQAK
Ga0211734_1122691113300020159FreshwaterMTSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQEVK
Ga0211731_1147067133300020205FreshwaterMATSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQVKVPQEANA
Ga0208091_103454113300020506FreshwaterMSTSKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQ
Ga0181351_1000167193300022407Freshwater LakeMATDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSDKVKA
Ga0244776_1045128433300024348EstuarineMPTDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKS
Ga0208644_101826173300025889AqueousMSTSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQEVK
Ga0209704_117977413300027693Freshwater SedimentTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA
Ga0209704_123603233300027693Freshwater SedimentMTTAVKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQSEKVKA
Ga0209599_1002893723300027710Deep SubsurfaceMTSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQETKA
Ga0209492_112741943300027721Freshwater SedimentMSEKIKDRYMTVRLPADVEMLLRKHAQESTRTLAAQILHYVKLGLSSESQAK
Ga0209492_118360123300027721Freshwater SedimentMTEKVKDRYMTMRLPADVERELRKMAEANTRTLAAQILHYVKMGLQIEKK
Ga0209288_10000760213300027762Freshwater SedimentMSTDKIKDRYMTLRLPADVEIELRKMAEANTRTLAAQILHCIKLELARQEKGVKA
Ga0209288_1013227513300027762Freshwater SedimentMTTAVKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQEKVKA
Ga0209134_1012335943300027764Freshwater LakeMTTKIKDRYMTIRLPSDIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA
Ga0209246_1001164063300027785Freshwater LakeMATEKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA
Ga0209287_1030365213300027792Freshwater SedimentMSTEKIKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQEKVKA
Ga0247723_100143953300028025Deep Subsurface SedimentMTTSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQEVK
Ga0247723_100830893300028025Deep Subsurface SedimentMATSKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMEMERQQVKVPQKANV
(restricted) Ga0247840_1008606333300028581FreshwaterMTTSKIKDRYMTIRLPADVEHELRKMAERNTRTLAAQILHCVKMEMERQQAQETKA
Ga0307378_1110762623300031566SoilMTTVKIKDRYMTIRLPADVERELRKMAERNTRTLSAQVLHYLKQGLEKVKA
Ga0307376_1002910653300031578SoilMTEKIKDRYLTVRLPADVERDLRKHAETGTRTLAAQILHYVKSGLAKETK
Ga0315907_1076408433300031758FreshwaterKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA
Ga0315289_10006101263300032046SedimentMTDKIKDRYMTLRLPADVERELRKMAEANTRTLAAQILHCIKLELARQEKVKA
Ga0334994_0000073_29486_296563300033993FreshwaterMATAKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQEAKA
Ga0334994_0117780_1210_13743300033993FreshwaterMTEKIKDRYMTLRLPADVEVELRRMAEANTRTLAAQILHCIKLELARQFARDKA
Ga0334979_0420112_443_6223300033996FreshwaterMATTKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMEMERQQIKVPQEASA
Ga0334986_0260496_225_3923300034012FreshwaterMTTKINDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA
Ga0334985_0073582_1555_17253300034018FreshwaterMATAKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQAQETKL
Ga0335002_0225822_239_4093300034020FreshwaterMATSKIKDRYMTIRLPADIERELRKMAERNTRTLAAQILHCVKMEMERQQVQEAKA
Ga0335005_0000380_28770_289373300034022FreshwaterMPTDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQEKGAKA
Ga0335000_0808203_150_3203300034063FreshwaterMATSKIKDRYMTIRLPADIERELRKMAEHNTRTLAAQILHCVKMEMERQQAQETKA
Ga0335019_0426812_381_5453300034066FreshwaterMTEKIKDRYMTLRLPADVEMELRRMAEANTRTLAAQILHCIKLELARQFARDKA
Ga0335012_0599834_154_3213300034093FreshwaterMPTDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQFARDKA
Ga0335031_0171359_722_8893300034104FreshwaterMSTDKIKDRYMTLRLPADVEIELRKMAEANTRTLAAQILHCIKLELARQSEKVKA
Ga0335051_0280647_65_2443300034109FreshwaterMAASKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMEMERQQIKVPQKAIA
Ga0335066_0656026_381_5183300034112FreshwaterMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKA
Ga0335054_0015657_4101_42683300034119FreshwaterMPTDKIKDRYMTLRLPADVEIELRKMAEENTRTLAAQILHCIKLELARQSEKVKT


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