Scaffold Ga0164294_10000149

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10000149
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64293
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (67.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F002434	Metagenome / Metatranscriptome	559	Y
F003268	Metagenome / Metatranscriptome	496	Y
F076100	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000014916	F003268	N/A	MSQNNVPNTLPGVERLIQRIAVAERSQQKDIRMSIQEARELTQELAVMTAKLGKTVQEIHAMLVEIRESTTNINVKFDGGNFS*
Ga0164294_100001493	F076100	GAG	MRYITNKFDSVRLPVEEGLLEWLQAKYPASKYYIKEQE*
Ga0164294_1000014947	F002434	GGAG	LTTEAHDKMIQAFQEYFKWQDRFEYKNSDEAGIKARNALSEIREQASTRRVEIQAKREQRKQARKGMVGRPPKIHKG*
Ga0164294_100001495	F001957	AGGA	MNSVDMANNLIFRAKNLTEFVVTTEVPENFRLNGVVPFGIHIVEGILEAKVWAIDFNEAAHRLNEFLETCK*