Scaffold Ga0164293_10031574

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10031574
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4390
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050379	Metagenome	145	Y
F073074	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100315742	F073074	GGA	MDIITKTARDAARLLNAIRAQYIIVLPTGEQIIQGDLKLHVPDAKPTKKPRAVSRHPRGFLNNHIAPHLEPLKVGDVAVIPLPADVSMKELQGSGASIANVLWGNGSYKTMRNDKTGCLEVLRMG*
Ga0164293_100315744	F050379	AGGA	MTSNELTDAQLQMEADDLIAKYRDEIIDQGDWWYGTDDYSFNIHCLDDECDGWYNVNVYKVDPVTGMDNYEWMIDLPRVFLGVPT*