Scaffold Ga0164293_10016201

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10016201
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6255
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y
F068817	Metagenome	124	Y
F098668	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1001620115	F004475	GGA	MSNWTKELTDKQKEEIWDFIVFTVKEIRDQIAVDIEGTAQLWKAKGLNKSRRTQKAFDISAAIARGQNEVQIKKP*
Ga0164293_100162013	F068817	N/A	VSDINEFIKDPWKRFNEMRNTPHVCDYNYIVDSISGQPAFFEICKLCLDTSAVIEMNDE*
Ga0164293_100162015	F098668	AGAAG	MKNLSNLISASGSFNLDEALRAVAELHIPEGTLVHRCQEDKKPWPCQTIQAIEKELTK*
Ga0164293_100162017	F037701	AGGA	MIKSKEWRVSNRVWIGVGFAPRRIALGFSVDRFNANIDFLWFWVSLEY*
Ga0164293_100162018	F020851	N/A	MSEDIVDLAISMAEIDTGMQIPLEEREAMKQRILTRIKEINE*