Scaffold Ga0164293_10013686

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10013686
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6823
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025009	Metagenome	203	Y
F030983	Metagenome	183	Y
F037222	Metagenome	168	Y
F047492	Metagenome	149	Y
F056421	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1001368617	F030983	AGGA	MTNEIETIIKTEDNVRVSIDSWDNGGAWLHLSMRHGTASAVLTRSEAEQLLAGLQLILAQEVTA*
Ga0164293_1001368620	F056421	AGGAG	MKDDDVEDLFAYGWLDTALAIVLALVALVALSFFAGYLI*
Ga0164293_100136865	F037222	GAGG	MDTTTPPPTSQLRLDWLETLTQTYAELALAGGDQALKDGRRNYLIARFKELEQDFPGITAIIHTKIRAMK*
Ga0164293_100136866	F047492	AGG	MNIFEQGKTLFTQNEFNQALAEAKAEIMSVAVYTTKQAMYLERRACAQMLLDMADNEDEGTVCTALRNAADQLVNRVPVQNQ*
Ga0164293_100136868	F025009	AGGA	MTPMKVKWYEGRKGKIGIAKVQTEDGDTEYRIGTVDGFLEHMDVQQVVAWGVWFPIEAGDALFLEGV*