Scaffold Ga0164293_10013182

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10013182
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6951
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100131821	F005529	GGA	MPRIQPTKTDYSLEIRYRLRDGHWSPWSNKGKGKFETMEVVQRQIRTLAASYQLREKEVRFEWNGVLCDFAGNKTGEVITLK*
Ga0164293_1001318210	F030017	N/A	MELDAITEKIKSLYLEGLTRKKIAKALGLDDQKVGYLLYTKMRLHELYPRKLMDENIFQILTDHQISRILTLATYGYCCREIAEDQNIEFRKVKKLLDVAQAKNMIEKKV*
Ga0164293_1001318211	F024318	N/A	MSNYLYLGKFIKRPGDLAPKGVASTYDKEKISFNLTFERLWNLMR*
Ga0164293_100131826	F008073	N/A	MNETILTHLRKMEFVCGLKQFKEYKKEEATELLDCLSKLFSSYGWITEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEIQALNNQEKQYSDEEIEHWKEIGRQTFRDNYQNAKETGHCKHIADWGIYWFNRLQEKGILKPWEFNVEEIESDVRRELRLTSRYVEESTVGAKTKNKIWKLFILQAIKDNKNLDQLI*