Basic Information | |
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Taxon OID | 3300013004 Open in IMG/M |
Scaffold ID | Ga0164293_10010916 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7612 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (20.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009202 | Metagenome / Metatranscriptome | 321 | N |
F010908 | Metagenome / Metatranscriptome | 297 | Y |
F014228 | Metagenome | 264 | N |
F025437 | Metagenome | 201 | N |
F039112 | Metagenome | 164 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164293_1001091610 | F010908 | GAGG | MKQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKVITNHKEGRAQLCKCK* |
Ga0164293_1001091611 | F009202 | N/A | MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDSL* |
Ga0164293_1001091614 | F039112 | N/A | MTLSFSSDVYTEMVQVQQAQIQALQNKVAELQAHIEVLQQQSILFI* |
Ga0164293_1001091618 | F014228 | N/A | MNGLTNLRMPLNRLAMWTILLTATLAALSSCATVKPVLQSVVVRDTVIVTKTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKERKQRGWTLEGGAVLLMLILVGGYIVKRWVDKLTE* |
Ga0164293_100109169 | F025437 | N/A | MRPFELRQLKVSKEQYFARLGFPDNGGRAHKESTARAAFVSAFRNHATLHELGEAIEKDHSSVAYAVRMHKDRLMYGDYQHYYKVACCVLEENPMACIDKPDFESLQVELNKLNEVVAELSKYKELYLTLKRTFDEF* |
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