Scaffold Ga0164293_10010916

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10010916
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7612
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F010908	Metagenome / Metatranscriptome	297	Y
F014228	Metagenome	264	N
F025437	Metagenome	201	N
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1001091610	F010908	GAGG	MKQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKVITNHKEGRAQLCKCK*
Ga0164293_1001091611	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDSL*
Ga0164293_1001091614	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKVAELQAHIEVLQQQSILFI*
Ga0164293_1001091618	F014228	N/A	MNGLTNLRMPLNRLAMWTILLTATLAALSSCATVKPVLQSVVVRDTVIVTKTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKERKQRGWTLEGGAVLLMLILVGGYIVKRWVDKLTE*
Ga0164293_100109169	F025437	N/A	MRPFELRQLKVSKEQYFARLGFPDNGGRAHKESTARAAFVSAFRNHATLHELGEAIEKDHSSVAYAVRMHKDRLMYGDYQHYYKVACCVLEENPMACIDKPDFESLQVELNKLNEVVAELSKYKELYLTLKRTFDEF*