Scaffold Ga0164293_10009909

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10009909
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7990
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y
F017972	Metagenome	237	Y
F018135	Metagenome	236	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000990918	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPETYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGVHTRANAVPPFGDPADAGEDEGYDGGEA*
Ga0164293_1000990919	F017972	GGAGG	VRTRHLSLVTQRHSVTTTTKSSAYSPYGPVSPGSTTLLAQETLRANQEAQLLELLNSLESVVDNLNYKSFTAYDTLVIAMEGVRVALSDTQIDEAGTDPLQ*
Ga0164293_1000990920	F013279	AGG	MQYDYRCPDCNSELTIERSIHEEPREPSCFDCHIPMIRKWDSPAITFKGKGFYSTGG*
Ga0164293_100099095	F086805	N/A	VRELSKRGNLVAGIAIGLLIAGLVWISGNVWITEEGRICLGSMLKCM*
Ga0164293_100099096	F018135	AGG	MTIERVAHSGAYVLSDFVGEGAGEYLFTRTYYGYTLAQAKAQFKIALAEEGK*