Scaffold Ga0164293_10005344

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10005344
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10924
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003579	Metagenome / Metatranscriptome	478	Y
F005113	Metagenome / Metatranscriptome	411	Y
F019100	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100053441	F005113	N/A	MTKDEHKNAIVQQLQQQSLNLLVDSLAAALSEIEQLKAAANADKPTP*
Ga0164293_1000534412	F019100	N/A	MTEPEQSPSEILARRNVQNIAVKLKAGKTLTTSERKALNDFQTGQLDGWVKDLSTLAKELGLSRQAIYDARNRFPDAPKKHEDGRRENLAAWQQFCAENVIGKDVATKNLAELKAELMREQIRLARSKNEREAGDVIDREVVEAMLVTLGQKLNLLLRLKLEVELGPRGVGMNAAELNVEGGVILGEIREVINANIATFEGEALDRSRGADAIV*
Ga0164293_100053442	F003579	N/A	MGSPAAPKVGTLFEVRYVNYTGVTAVADCHLLDADGVEIMAVGLVPATAEQCAAWTDDAAFACVLAVNAGFELVSK*