Scaffold Ga0164293_10005179

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10005179
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11106
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (90.62%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001507	Metagenome / Metatranscriptome	681	Y
F002071	Metagenome / Metatranscriptome	596	Y
F005531	Metagenome / Metatranscriptome	397	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007470	Metagenome / Metatranscriptome	350	Y
F008132	Metagenome / Metatranscriptome	338	Y
F011299	Metagenome / Metatranscriptome	292	Y
F061860	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000517911	F011299	AGG	MMTRKHFEATAEILKYASNKTHPALFSKMVNDFSLMFAKENPNFNVNKFHEACNYHVPKLTTH*
Ga0164293_1000517914	F002071	AGGAG	MEIGQTYTTTTSGITGIIKAVDNHPSGVNRILLDVNGKERWTSAPAN*
Ga0164293_1000517920	F000311	GAGG	MYFELTAPNQLALQRAFWDAEVTGLDPQMIDSLTFNIGTGSIEKVSRIRDKFNLTETYTSDYEPTGYTGR*
Ga0164293_1000517921	F007470	GGAG	MDYQDGFEDGVKFAREVIVANIRLWAESSDDGQVYDEIADTIEFGTVDYDL*
Ga0164293_1000517923	F000450	AGGCGG	MGDRANFVFVQDSGETIVLYGHWAGHDMLKNLADAVVNARRRWNDDSYATRIATSRMIGDQWNMETGWGLSVNQIMDNEHKIPVINWKDQTFSLHEEDDFRNQANKVKGMKNEALFTMDLSAFCEKYSDELLPV*
Ga0164293_1000517925	F001507	AGGTGG	MNTEYKPYTIDELVTTIYEDNFSHFDFMDNMNGGDCDCNLHTAMDLIVKYWGE*
Ga0164293_1000517928	F061860	AGAAGG	MIPTTELEPYLQKQVDNGLPGTDILHGALKNMMLDTEQILNPLLENSNELGSDEEYEDTVQRLYSEGYMDALTEVYALTYNLAFAINERTKKNAN*
Ga0164293_100051793	F008132	AGAAG	MMTKWDTIQADVSDAYAHLQEEEMYEQLMAEEEDVFGFTKAIQIDHLTDEQVDEIFDMFGDK*
Ga0164293_1000517931	F000852	AGGAG	MTTKREYLVSKGITVGRRGRFSGAAKVALAEAEKAGIKFSAEKPATTSK*
Ga0164293_100051794	F005531	GGAG	MIITYSLWQGSQLLSVNNKANKPEEILAIIEELNKLGKGFTFNVREVNTNE*
Ga0164293_100051798	F006744	AGG	MNLEEFKAHVLATRQQSKSEALSVLSATISTTTGKEN*