Scaffold Ga0164293_10003125

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10003125
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14121
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009529	Metagenome / Metatranscriptome	316	Y
F020909	Metagenome	221	Y
F024097	Metagenome / Metatranscriptome	207	N
F025466	Metagenome / Metatranscriptome	201	Y
F058137	Metagenome	135	Y
F096878	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000312513	F058137	N/A	MVGKKVRSVRVSDQLWARAMAKAKSEGKSVSEVIVDFLKEYIK*
Ga0164293_1000312514	F020909	AGG	MITKRGKQVRAIGIVFLVYVLFHISANLWWVGIDSPNAEFLGWCWGSMSECVVL*
Ga0164293_1000312516	F096878	GAG	VGLLINRDPLFSVHNSLNGDVAIYLEERDAALDLVEDVLAAVPMADLEAIENLMITDLKSSDAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPLTTKLELVK*
Ga0164293_1000312517	F024097	GGAG	LANPNGRKGALFETSVMKWLRDRGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAKNYAVARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRD*
Ga0164293_1000312531	F009529	AGGAG	MNCTICDKATKNEGACLTCELKVKACLVELPALQYEAGNHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHILHGYEVPIRIGRGLTPPAYIDKEPSIEAEVDATCSFHLAHLDYTLLQPWAVDFASDVYGLHAKGRAAAKKFSEQARRIPCPTDDCKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIVKRNDIEKRGSLYNFGDILKVVQI*
Ga0164293_100031256	F025466	AGGAG	MFDAVKIQAIVMTYLRAGAAAVLALYLANPNQPLKNYLFAGVAAVAGPVMKALDPKATEFGKGSK*