NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157148_1002442

Scaffold Ga0157148_1002442


Overview

Basic Information
Taxon OID3300012991 Open in IMG/M
Scaffold IDGa0157148_1002442 Open in IMG/M
Source Dataset NamePig viral communities from oral cavity of healthy adult pig - Individual 0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAutonomous University of Barcelona
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2435
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Oral Cavity → Unclassified → Pig Oral Cavity → Pig Viral Communities From Oral Cavities And Ears Of Healthy Adults Pigs From Denmark

Source Dataset Sampling Location
Location NameDenmark
CoordinatesLat. (o)56.0Long. (o)10.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036964Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0157148_10024424F036964N/AMKRRLKMISFLKIAFPALMVTGALGSLVVNIISKGDKATSLQWIGASLLYTALLFRNK*
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