Scaffold Ga0157148_1000038

Overview

Basic Information

• Taxon OID: 3300012991
• Scaffold ID: Ga0157148_1000038
• Source Dataset Name: Pig viral communities from oral cavity of healthy adult pig - Individual 0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Autonomous University of Barcelona
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15105
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Oral Cavity → Unclassified → Pig Oral Cavity → Pig Viral Communities From Oral Cavities And Ears Of Healthy Adults Pigs From Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 56.0
  • Long. (^o): 10.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066313	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157148_10000388	F066313	N/A	MSKKFNEWMSRKNNWFSAIGGETFTNAEVVYTHLGLIVFLIILGLVGNLE*