Scaffold Ga0168317_1000234

Overview

Basic Information

• Taxon OID: 3300012982
• Scaffold ID: Ga0168317_1000234
• Source Dataset Name: Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42043
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (65.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: Hibbing, MN, USA
• Coordinates
  • Lat. (^o): 47.432362
  • Long. (^o): -92.940835

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003606	Metagenome / Metatranscriptome	477	Y
F009567	Metagenome / Metatranscriptome	316	Y
F021751	Metagenome / Metatranscriptome	217	Y
F083418	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168317_100023419	F003606	GAGG	MRPRSANEWRDFWRDGGERALAARLDEFEPHSVRIATLLGSAAPLRAIVAELGRIREHDLRLPPDPARDAEVAERIHAWFPGA*
Ga0168317_100023427	F083418	N/A	MHLLFLTTHNALRLEEVAGALVAIAGAVMVLGSMAPMGRRGSQWLAGLAFAIAGVLAVIALHWGHK*
Ga0168317_100023439	F009567	N/A	MSGVICVLGAGAARAALGSFDGFDEVVILEPSVDELERLLAELADPRLDYLLGELPVLPLPDASVDRVIGGDGADPEVARVLR*
Ga0168317_10002345	F021751	AGGAG	MIGVGIALVLVGIVFLFIAPWVGIPVGIVGLVLAILWFAGFGRRAARGGRSANGR*