Scaffold Ga0168315_107633

Overview

Basic Information

• Taxon OID: 3300012980
• Scaffold ID: Ga0168315_107633
• Source Dataset Name: Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCW15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1093
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: Hibbing, MN, USA
• Coordinates
  • Lat. (^o): 47.432362
  • Long. (^o): -92.940835

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004823	Metagenome / Metatranscriptome	422	Y
F103958	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168315_1076331	F103958	N/A	VTKPALNSRVQSLVTEYGVFWQFWPQFEQTHGERRLVGFEVELIGSHTSDLNHV
Ga0168315_1076334	F004823	AGGAG	MYATKAINGVPAIQRDGQSVLGVCDQNWEFANWLCALLNELGRKSELLLNEHEQEWLNANDHAFRRTAQHA*