Scaffold Ga0168315_104445

Overview

Basic Information

• Taxon OID: 3300012980
• Scaffold ID: Ga0168315_104445
• Source Dataset Name: Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCW15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: Hibbing, MN, USA
• Coordinates
  • Lat. (^o): 47.432362
  • Long. (^o): -92.940835

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168315_1044452	F001596	AGGAG	MSWFHSSTAAVDARNYASPAEIVACFQDERNVLGRLAFLITGEQATADQSVINACEISLKGNSPFRDWLLEWAKTATISSAISRRAEAIRSYGAAYVDRRCTHVEHFSGGDVDERESSLARILRTDPWALIAELDPLCRAILVLRLAMRSSIQECVLRLNVSRAVVLGANCHAMTWLEERHVKAEEENHDASYAV*
Ga0168315_1044453	F006278	GAGG	MFRAEIQWLANGPTLKLEGKLVADWAEQARFLVTKDVLPKGLIVDLTEVSYIDSVGEQLLKWLASVGAVFVAGNVYAIAICDRLSLSPVQKISERPKRRHGNYEKRSSIRHSHPVEAI*