Scaffold Ga0168315_101445

Overview

Basic Information

• Taxon OID: 3300012980
• Scaffold ID: Ga0168315_101445
• Source Dataset Name: Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCW15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2716
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: Hibbing, MN, USA
• Coordinates
  • Lat. (^o): 47.432362
  • Long. (^o): -92.940835

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008377	Metagenome / Metatranscriptome	334	Y
F023929	Metagenome / Metatranscriptome	208	Y
F083105	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168315_1014453	F008377	AGGA	MNEAEAQPWYQLYTSAIAELDPKRLIERVEATEAAIHGRLQDLQYDSDHHEERQRMADAQRTLAFLRRCF*
Ga0168315_1014457	F023929	N/A	LRLECKFWLEDDGWNAIIESLGITVHADSFETAKTDMELALGKHIESLLREHGAVGRGRAA*
Ga0168315_1014458	F083105	AGGAG	MAIFDEPYIVVDVESQRLTLQGMLSGEVITIVNTAPDSPLTQEDYPRGQLVALTDPSTALLN*