Scaffold Ga0134077_10104872

Overview

Basic Information

• Taxon OID: 3300012972
• Scaffold ID: Ga0134077_10104872
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1097
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010965	Metagenome / Metatranscriptome	297	Y
F048291	Metagenome / Metatranscriptome	148	Y
F074854	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134077_101048721	F048291	GAG	MDLTSAAARKLAGKSSRRQFFKFLGVGSLGAGLFLTGTKVSLGAIQGCVGCGGGPCNPCGSP
Ga0134077_101048722	F010965	GGA	MDLANIAARSLARRSSRRQFFKFLGAGTLGTGLFLTRTGVSLGAVTSCVGCGGGPCNPCFSPATLCENVAGGQYKCKTCQQGGGCPTGCITSGEWFCCLTTGRVGCRFRCSECNCGPNGNCNDPACHCFTNTAIPCTPRLHSGDQPCACPPVEAPIPSLAS*
Ga0134077_101048723	F074854	GGAGG	MKDGAIYLLSRQVKGDHGESYMQNVTVFANSATQAKSLVDDQFAALRKSNGARDLAYQKLPEFSVEKVSLDVYKMITAGITTY*