Scaffold Ga0126369_10000545

Overview

Basic Information

• Taxon OID: 3300012971
• Scaffold ID: Ga0126369_10000545
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24777
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (62.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Tsukamurellaceae → Tsukamurella → Tsukamurella conjunctivitidis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059390	Metagenome / Metatranscriptome	134	Y
F092511	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126369_1000054519	F092511	GGAGG	MTDISAYTDDQAAQITQLQQQQSIFTQALKASVEGRWTGADSVEAYLYALDPTLQGTVTPDPPVTDSEYAEDQPPKG*
Ga0126369_1000054521	F059390	AGGGGG	MHVATVGTYPVTIGWLIALLVLILAILGLVGVLPQSATVVFGLIAALAVARLT*
Ga0126369_1000054524	F059390	AGG	MHVATVGTYPVTIGWLIALLVLILAILGLVGVLPMSQTVVFGLIAALAVARLT*