Scaffold Ga0163179_10006477

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10006477
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7721
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F028003	Metagenome / Metatranscriptome	193	Y
F059330	Metagenome	134	N
F077798	Metagenome	117	N
F081356	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000647712	F002747	AGAAGG	MAKDVRYFVDVCLEIYVPDQGCGEQALNNESKDANWFANEICNQIPKAINKNFKYSERPYSVNDATFVKQQRG*
Ga0163179_100064772	F077798	N/A	MTDISKKFKMIIKHEELFKDNRVVMERLKELVNTKQSFKNITEDEIEALYIYLNRHNLPKS*
Ga0163179_100064775	F081356	GAGG	MASVIEGKYKLIKDYTSIEGALYTNEVVKVYDNNTKPGHIRAKDSMGRVWFIPKKYLKKM
Ga0163179_100064776	F028003	GAG	MCDKGQNKLTSDYLSFLKFKEVQNALVKISQTPGKTYIFDGIIHEKGMTCAQADRVLDNIFNAKTNLEMIGFIVKVARQIGFSEITLPRKIRWHQ*
Ga0163179_100064779	F059330	GGA	MTDKQIIEKTKDWLWELTEPNEKFGGFGICPFLKKELTNDDMKFVILKGQDFKNGLDNWIKENKYNSVLFICLGEIWEHIERKSYQKALQNSMKEGGYKDYKALCFSPYEDKTAAGIKTRENAPYFLINIMDSKDLGKAHEKMIDTKYFDNFTKDELVDIKIYGKKTKKALDINKKN*