Scaffold Ga0163179_10001550

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10001550
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16212
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020790	Metagenome / Metatranscriptome	222	Y
F040861	Metagenome / Metatranscriptome	161	N
F048411	Metagenome	148	Y
F062174	Metagenome	131	N
F090879	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000155017	F048411	N/A	MTINWNDGTYVFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0163179_1000155019	F062174	N/A	MIDPKITKDLDNYLTYHNKLKRMKEVMGGEYRMEMNVESCRPLIEDGFDLSDIVEYFILELRDYTDNRYMDDLRRAKEIEAEEKAKANE*
Ga0163179_1000155041	F090879	N/A	MEQLDTLTLSQSEESMDFSLRDHHIERIKHHMTMLNYYLKEQKNDRMGD*
Ga0163179_100015507	F020790	N/A	MKISKQMMDDKLLQIATFEEKYGEDHGITRVNAMKKYCSDEKYRERVHAFNKASVNTIKNYYKLI*
Ga0163179_100015508	F040861	N/A	MLEKLKPIKTTPTGIYFRMADGRIGYANHQYARVSVTREGIRNGEYYKEDNEIGDRLYQINSREEINREYDYDGVKKTISGVARVKYNDISEAINALQNFNNKNCGEYAVELRKNKILKQYEEHKALNIKSYLTKERVKEADAWVEAYNEGYNEGFTEGVASIEDKLVKLINNL*