NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F090879

Metagenome Family F090879

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090879
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 48 residues
Representative Sequence MEQLDTLTLNQSEESTDFSLHDHYTERIKYHMTMLNYYLKEEKNDRMGN
Number of Associated Samples 87
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 15.74 %
% of genes from short scaffolds (< 2000 bps) 67.59 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.667 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(36.111 % of family members)
Environment Ontology (ENVO) Unclassified
(74.074 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(81.481 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.45%    β-sheet: 0.00%    Coil/Unstructured: 54.55%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF00268Ribonuc_red_sm 27.78
PF06356DUF1064 25.00
PF02867Ribonuc_red_lgC 6.48
PF03819MazG 3.70
PF00303Thymidylat_synt 2.78
PF10544T5orf172 1.85
PF04404ERF 1.85
PF13155Toprim_2 0.93
PF01068DNA_ligase_A_M 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 27.78
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 6.48
COG0207Thymidylate synthaseNucleotide transport and metabolism [F] 2.78
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.93
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.67 %
All OrganismsrootAll Organisms33.33 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10001627Not Available14774Open in IMG/M
3300000117|DelMOWin2010_c10003017Not Available10585Open in IMG/M
3300000149|LPaug09P1610mDRAFT_c1000014Not Available34641Open in IMG/M
3300000159|LPaug08P2610mDRAFT_c1011057Not Available1102Open in IMG/M
3300000159|LPaug08P2610mDRAFT_c1024570All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.623Open in IMG/M
3300000929|NpDRAFT_10229490Not Available884Open in IMG/M
3300001472|JGI24004J15324_10036970Not Available1537Open in IMG/M
3300001472|JGI24004J15324_10089283All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.815Open in IMG/M
3300001589|JGI24005J15628_10154510All Organisms → Viruses → environmental samples → uncultured virus693Open in IMG/M
3300001938|GOS2221_1006019All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1504Open in IMG/M
3300004097|Ga0055584_100882045Not Available936Open in IMG/M
3300004457|Ga0066224_1014218All Organisms → Viruses908Open in IMG/M
3300005239|Ga0073579_1190517Not Available73084Open in IMG/M
3300005612|Ga0070723_10277741All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium785Open in IMG/M
3300006029|Ga0075466_1017486Not Available2359Open in IMG/M
3300006164|Ga0075441_10109615Not Available1056Open in IMG/M
3300006165|Ga0075443_10129332Not Available883Open in IMG/M
3300006735|Ga0098038_1117533All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium906Open in IMG/M
3300006737|Ga0098037_1101337Not Available997Open in IMG/M
3300006749|Ga0098042_1047497Not Available1173Open in IMG/M
3300006752|Ga0098048_1004053Not Available5834Open in IMG/M
3300006920|Ga0070748_1110084Not Available1045Open in IMG/M
3300007539|Ga0099849_1207553All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.734Open in IMG/M
3300007647|Ga0102855_1000291Not Available17977Open in IMG/M
3300007863|Ga0105744_1011047Not Available2321Open in IMG/M
3300007992|Ga0105748_10079462Not Available1295Open in IMG/M
3300009172|Ga0114995_10091493Not Available1709Open in IMG/M
3300009172|Ga0114995_10725198All Organisms → Viruses → environmental samples → uncultured virus544Open in IMG/M
3300009173|Ga0114996_10077770Not Available2877Open in IMG/M
3300009173|Ga0114996_10614865Not Available805Open in IMG/M
3300009409|Ga0114993_10843210All Organisms → Viruses → environmental samples → uncultured virus659Open in IMG/M
3300009420|Ga0114994_10240273Not Available1214Open in IMG/M
3300009423|Ga0115548_1044885Not Available1604Open in IMG/M
3300009432|Ga0115005_10311468Not Available1239Open in IMG/M
3300009512|Ga0115003_10041495Not Available2952Open in IMG/M
3300009526|Ga0115004_10292991Not Available966Open in IMG/M
3300009526|Ga0115004_10542785All Organisms → Viruses → environmental samples → uncultured virus688Open in IMG/M
3300009790|Ga0115012_10006853Not Available6814Open in IMG/M
3300010392|Ga0118731_106552861Not Available1007Open in IMG/M
3300011013|Ga0114934_10014021Not Available4551Open in IMG/M
3300012953|Ga0163179_10001550Not Available16212Open in IMG/M
3300013101|Ga0164313_10461443Not Available1058Open in IMG/M
3300013103|Ga0164318_10999119All Organisms → Viruses → environmental samples → uncultured virus689Open in IMG/M
3300017706|Ga0181377_1051449All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium787Open in IMG/M
3300017714|Ga0181412_1067130Not Available881Open in IMG/M
3300017714|Ga0181412_1136950All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.556Open in IMG/M
3300017724|Ga0181388_1038218Not Available1173Open in IMG/M
3300017726|Ga0181381_1111209All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium576Open in IMG/M
3300017735|Ga0181431_1008447Not Available2497Open in IMG/M
3300017740|Ga0181418_1013636Not Available2182Open in IMG/M
3300017742|Ga0181399_1009527Not Available2869Open in IMG/M
3300017750|Ga0181405_1012978Not Available2371Open in IMG/M
3300017762|Ga0181422_1070067Not Available1111Open in IMG/M
3300017762|Ga0181422_1086062Not Available990Open in IMG/M
3300017762|Ga0181422_1127644All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.786Open in IMG/M
3300017782|Ga0181380_1272587All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.558Open in IMG/M
3300020165|Ga0206125_10179717Not Available835Open in IMG/M
3300020336|Ga0211510_1052036Not Available999Open in IMG/M
3300020358|Ga0211689_1099592All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium822Open in IMG/M
3300020376|Ga0211682_10159395Not Available888Open in IMG/M
3300020428|Ga0211521_10333039Not Available671Open in IMG/M
3300020438|Ga0211576_10015924Not Available4637Open in IMG/M
3300020438|Ga0211576_10042772Not Available2620Open in IMG/M
3300021375|Ga0213869_10031901All Organisms → Viruses2863Open in IMG/M
3300022072|Ga0196889_1014900Not Available1665Open in IMG/M
3300022178|Ga0196887_1056056Not Available988Open in IMG/M
3300022221|Ga0224506_10003757Not Available9978Open in IMG/M
(restricted) 3300022913|Ga0233404_10012073All Organisms → Viruses1958Open in IMG/M
(restricted) 3300023109|Ga0233432_10051121Not Available2605Open in IMG/M
3300024343|Ga0244777_10046845Not Available2765Open in IMG/M
3300024348|Ga0244776_10002643Not Available17918Open in IMG/M
3300024348|Ga0244776_10042197Not Available3607Open in IMG/M
(restricted) 3300024518|Ga0255048_10299629Not Available780Open in IMG/M
(restricted) 3300024519|Ga0255046_10596419All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium532Open in IMG/M
3300025071|Ga0207896_1001350Not Available4746Open in IMG/M
3300025071|Ga0207896_1002633Not Available3398Open in IMG/M
3300025071|Ga0207896_1035949Not Available834Open in IMG/M
3300025085|Ga0208792_1045440All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.833Open in IMG/M
3300025086|Ga0208157_1074790All Organisms → Viruses857Open in IMG/M
3300025120|Ga0209535_1011606Not Available4914Open in IMG/M
3300025120|Ga0209535_1067038All Organisms → Viruses1430Open in IMG/M
3300025120|Ga0209535_1162101All Organisms → Viruses686Open in IMG/M
3300025137|Ga0209336_10063687All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED2111108Open in IMG/M
3300025137|Ga0209336_10152081All Organisms → Viruses → environmental samples → uncultured virus611Open in IMG/M
3300025137|Ga0209336_10194789All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium503Open in IMG/M
3300025138|Ga0209634_1014999Not Available4494Open in IMG/M
3300025138|Ga0209634_1095075Not Available1332Open in IMG/M
3300025168|Ga0209337_1142936All Organisms → cellular organisms → Bacteria1047Open in IMG/M
3300025266|Ga0208032_1105424All Organisms → Viruses → environmental samples → uncultured virus529Open in IMG/M
3300025696|Ga0209532_1057030Not Available1532Open in IMG/M
3300027668|Ga0209482_1000698Not Available27454Open in IMG/M
3300027813|Ga0209090_10017759Not Available4188Open in IMG/M
3300027845|Ga0209271_10231862All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium746Open in IMG/M
3300027859|Ga0209503_10183993Not Available1001Open in IMG/M
3300027906|Ga0209404_10082418Not Available1874Open in IMG/M
3300027906|Ga0209404_10185493Not Available1283Open in IMG/M
3300027906|Ga0209404_10509424All Organisms → Viruses → environmental samples → uncultured virus797Open in IMG/M
3300029448|Ga0183755_1002425Not Available9809Open in IMG/M
3300031143|Ga0308025_1028345All Organisms → Viruses2208Open in IMG/M
3300031143|Ga0308025_1053521Not Available1548Open in IMG/M
3300031569|Ga0307489_10096451Not Available1700Open in IMG/M
3300031569|Ga0307489_10185765All Organisms → Viruses1278Open in IMG/M
3300031602|Ga0307993_1051417Not Available1035Open in IMG/M
3300031625|Ga0302135_10004931Not Available7778Open in IMG/M
3300031673|Ga0307377_10673978All Organisms → Viruses → environmental samples → uncultured virus730Open in IMG/M
3300031688|Ga0308011_10117463Not Available812Open in IMG/M
3300031766|Ga0315322_10004383Not Available10880Open in IMG/M
3300033742|Ga0314858_120133All Organisms → Viruses → environmental samples → uncultured virus671Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine36.11%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater12.04%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine9.26%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.63%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.70%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.70%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine2.78%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.78%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.85%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.85%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.85%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.85%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.85%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.85%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean0.93%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.93%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.93%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.93%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.93%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.93%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.93%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.93%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000149Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10mEnvironmentalOpen in IMG/M
3300000159Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10mEnvironmentalOpen in IMG/M
3300000929Marine plume microbial communities from the Columbia River - 15 PSUEnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300001938Marine microbial communities from Bedford Basin, Nova Scotia, Canada - GS005EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006165Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007647Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02EnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009432Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M MetagenomeEnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009526Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300013101Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cmEnvironmentalOpen in IMG/M
3300013103Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cmEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020336Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)EnvironmentalOpen in IMG/M
3300020358Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)EnvironmentalOpen in IMG/M
3300020376Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)EnvironmentalOpen in IMG/M
3300020428Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022221Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1EnvironmentalOpen in IMG/M
3300022913 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025266Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)EnvironmentalOpen in IMG/M
3300025696Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)EnvironmentalOpen in IMG/M
3300027668Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027845Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300027859Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031143Marine microbial communities from water near the shore, Antarctic Ocean - #422EnvironmentalOpen in IMG/M
3300031569Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2EnvironmentalOpen in IMG/M
3300031602Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260EnvironmentalOpen in IMG/M
3300031625Marine microbial communities from Western Arctic Ocean, Canada - CBN3_surfaceEnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300031688Marine microbial communities from water near the shore, Antarctic Ocean - #177EnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_10001627103300000115MarineMNQLDTETSTQLEESTDFTLHEHHKERIIFHMRMLNHYLKEQKNDRMGN*
DelMOWin2010_1000301733300000117MarineMEQLDTLTLSQSEESMDFSLRDHHTERIKHHMTMLNYYLKEQKNDRMGD*
LPaug09P1610mDRAFT_1000014163300000149MarineMEQLNTLTLSQSEESMDFSLHDHYTERIKYHMTMLNYYLKEEKHDRMGD*
LPaug08P2610mDRAFT_101105723300000159MarineMDQLDTQTSIELEESTDFTLHEHHKERISFHMRMLNHYLKEQKNDRMGT*
LPaug08P2610mDRAFT_102457043300000159MarineMEQLNTLTLNRSEENTDFSLHDHYNERVKHHMIMLNYYLKEQKNDRMGN*
NpDRAFT_1022949023300000929Freshwater And MarineMNQSDTETSTQSEESTDFTLRDHYNERISFHMRMLNHYLKEQKNDRMGT*
JGI24004J15324_1003697033300001472MarineMNQSNTETSTQLEENMGFTLYDHYKERIKHHMKMLNYYLKEXKNDRLGT*
JGI24004J15324_1008928353300001472MarineMEQSNTLTLNRSEENTDFSLHDHYNERVKHHMIMLNYYLKEQKNDRMGN*
JGI24005J15628_1015451013300001589MarineQLDTQTSIELEESTDFTLHEHHKERISFHMRMLNHYLKEQKNDRMGT*
GOS2221_100601933300001938MarineMNQSDTETSTQLEENMGFTLYDHHKERIKHHMKMLNYYLKEQENDRLGT*
Ga0055584_10088204523300004097Pelagic MarineMEQLDTLTLSQSEESMDFLLHDHHAERIKHHMTMLNYYLKEQKNDRMGD*
Ga0066224_101421813300004457MarineMDQLDTQTSTELEESTDFTLRDHYKERISFHMRMLNHYLKEQKNDRMGT*
Ga0073579_1190517633300005239MarineMEQLDTLTLNQSEENMDFSLHDHYAERIKYHMTMLNYYLKEEKNDRMGN*
Ga0070723_1027774133300005612Marine SedimentMDQLDTQTSTELEESTDFTLRDHYEERISFHMRMLNHYLKEQKNDRMGT*
Ga0075466_101748653300006029AqueousMEQLDTLTLSQSEESMDFSLRDHHAERIKHHMTMLNYYLKEQKNDRMGD*
Ga0075441_1010961533300006164MarineMEQLNTQTSNLLEENMDFTLRDHHEERIRHHMKMLNYYLKEQKNDRMGD*
Ga0075443_1012933233300006165MarineMEQLDTQTSNLLEENMDFTLRDHHEERVKHHMKMLNYYLKEQKNDRMGD*
Ga0098038_111753323300006735MarineMDQSDILTSNLSEESTDFTLRDHYKERIKFHMTMLNYYLKEQKNDGMGN*
Ga0098037_110133723300006737MarineMDQSGMVTSNLSETNTDFTLREHYAERIKFHMNMLNYYLNEQTNDRMGN*
Ga0098042_104749753300006749MarineMDQSGMGTSNLSETNTDFTLREHYAERIKFHMNMLNYYLNEQTNDRMGN*
Ga0098048_100405393300006752MarineMDQLDTLKLTESEESMDFSLHDHYKERIGYHMKMLNYYLKEEKNDRMGN*
Ga0070748_111008453300006920AqueousMEQLDTLTLSQSEESMDFSLRDHHTERIKYHMTMLNYYLKEQKNDRMGD*
Ga0099849_120755353300007539AqueousLTLSQSEESMDFSLRDHHTERIKYHMTMLNYYLKEQKNDRMGD*
Ga0102855_1000291103300007647EstuarineMNQSDTETSTQLEESTDFTLRDHYNERISFHMRMLNHYLKEQKNDRMGT*
Ga0105744_101104733300007863Estuary WaterMNQSDTETSTQSEESTDFTLRNHYNERISFHMRMLNHYLKEQKNDRMGT*
Ga0105748_1007946233300007992Estuary WaterMNQSDTETLTQSEESTDFTLRDHYNERISFHMRMLNHYLKEQKNDRMGT*
Ga0114995_1009149333300009172MarineMNQLDIETSTQLEESTDFTLREHHEERISFHMQMLNHYLKEQKNDRMGN*
Ga0114995_1072519813300009172MarineMNQLDIETSTQLEESTDFTLRDHHKERVSFHMRMLNHYLKEQKNDRMGT*
Ga0114996_1007777053300009173MarineMEQLYTEPSTILEENMDFSLHKHHKERVEYHMKMLNYYLKEEYNDRLGN*
Ga0114996_1061486523300009173MarineMNQLDTETSTQLEESTDFTLRDHYKERVSFHMRMLNHYLKEQKNDRMGT*
Ga0114993_1084321043300009409MarineMNQLDTETSTQLEESTDFTLRDHYKERVSFHMIMLNHYLKEQKNERMGT*
Ga0114994_1024027353300009420MarineMNQLDTETSTQLEESTDFTLREHHEERISFHMQMLNHYLKEQKNDRMGN*
Ga0115548_104488533300009423Pelagic MarineMEQLDTLTLSQSEESMDFLLRDHHAERIKHHMTMLNYYLKEQKNDRMGD*
Ga0115005_1031146823300009432MarineMNQLDTETSTQLEESTDFTLRDHYKERVSFHMRMLNHYLKEQKNDRMGN*
Ga0115003_1004149523300009512MarineMNQSNTETSTQLEENMGFTLYDHYKERIKHHMKMLNYYLKEQKNDRLGT*
Ga0115004_1029299153300009526MarineMDQLDTQTSTELEESTDFTLRDHYKERVSFHMRMLNHYLKEQKNERMGT*
Ga0115004_1054278543300009526MarineDQLDTQTSTELEESTDFTLRDHYKERVNFHMRMLNHYLKEQKNDRMGT*
Ga0115012_10006853133300009790MarineMDQSDILTSNLSETNTDFTLREHYNERIKFHMTMLNYYLKEQKNDRMGN*
Ga0118731_10655286133300010392MarineMDQLDTQTSIKLEESTDFTLHEHHKERISFHMRMLNHYLKEQKNDRMGT*
Ga0114934_1001402193300011013Deep SubsurfaceMEQSDILILNQSEESMDFSLHDHYAERIRYHMTMLNYYLKEEKNDRMGD*
Ga0163179_10001550413300012953SeawaterMEQLDTLTLSQSEESMDFSLRDHHIERIKHHMTMLNYYLKEQKNDRMGD*
Ga0164313_1046144333300013101Marine SedimentMDQSDILTSNLSETNTDFTLREHYAERIKFHMTMLNYYLKEQKNDRMGN*
Ga0164318_1099911913300013103Marine SedimentMDQSGMVTSNLSETNTDFTLREHYAERIKFHMTMLNYYLKEQKNDRMGN*
Ga0181377_105144923300017706MarineMDQLDTLTLSQSEESMDFSLHDHYTERIKYHMTMLNYYLKEEKHDRMGD
Ga0181412_106713013300017714SeawaterMEQLNTLTLNQSEENMDFSLHDHYTERIKYHMTMLNYYLKEEKNDRMGN
Ga0181412_113695013300017714SeawaterMEQLDTLTLNQSEENMDFSLHDHYTERIKHHMTMLNYYLKEEKNDRMGN
Ga0181388_103821833300017724SeawaterMEQLDTLTLNQSEESTDFSLHDHYTERIKYHMTMLNYYLKEEKK
Ga0181381_111120923300017726SeawaterMEQLDTLTLSQSEESMDFSLHDHYTERIKYHMTMLNYYLKEEKHDRMGD
Ga0181431_100844733300017735SeawaterMDQSDILTLNLSETNTDFTLREHYAERIKFHMTMLNYYLKEQKNDRMGN
Ga0181418_101363653300017740SeawaterMDQSDILTSNLSEESTDFTLRDHYKERIKFHMTMLNYYLKEQKNDRMGN
Ga0181399_100952763300017742SeawaterMEQLDTLTLNQSEENTDFLLRDHYAERIKYHMTMLNYYLKEEKHDRMGD
Ga0181405_101297853300017750SeawaterMEQLDTLTLNQSEESTDFSLHDHYTERIKYHMTMLNYYLKEEKNDRMGN
Ga0181422_107006713300017762SeawaterQLDTLTLNQSEENMDFSLHDHYTERIKYHMTMLNYYLKEEKNDRMGN
Ga0181422_108606233300017762SeawaterMEQLDTLTLNQSEENMDFSLHDHYTERIKYHMTMLNYYLKEEK
Ga0181422_112764453300017762SeawaterQLDTLTLNQSEENMDFSLHDHYTERIKYHMTMLNYYLKEEKHDRMGD
Ga0181380_127258713300017782SeawaterMEQLDTLTLNQSEESTDFLLRDHYAERIKYHMTMLNYYLKEEKNDRMGN
Ga0206125_1017971733300020165SeawaterMEQLDTLTLSQSEESMDFLLRDHHAERIKHHMTMLNYYLKEQKNDRMGD
Ga0211510_105203633300020336MarineMEQLDTLTLNQSEENMDFSLHDHYAERIKYHMTMLNYYLKEEKNDRMGN
Ga0211689_109959243300020358MarineMEQSNTLTLNRSEENTDFLLRDHYTERIKHHMTMLNYYLKEEKHDRMGN
Ga0211682_1015939523300020376MarineMEQLDTQTSNLLEENMDFTLRDHHEERVKHHMKMLNYYLKEQKNDRMGD
Ga0211521_1033303923300020428MarineMEQLDTLTLNQSEENMDFSLHDHYAERIKYHMTMLNYYLKEEKNDRMG
Ga0211576_1001592473300020438MarineMNQSDTETSTQSEESTDFTLRDHYNERISFHMRMLNHYLKEQKNDRMGT
Ga0211576_1004277283300020438MarineMEQLDTLTLNQSEENMDFSLHDHYTERIKYHMTMLNYYLKEEKNDRMGN
Ga0213869_1003190133300021375SeawaterMEQLDTLTLSQSEESMDFSLRDHHTERIKHHMTMLNYYLKEQKNDRMGD
Ga0196889_101490053300022072AqueousMEQLDTLTLSQSEESMDFSLRDHHTERIKYHMTMLNYYLKEQKNDRMGD
Ga0196887_105605633300022178AqueousMEQLDTLTLSQSEESMDFSLRDHHAERIKHHMTMLNYYLKEQKNDRMGD
Ga0224506_10003757103300022221SedimentMDQLDTQTSTELEESTDFTLRDHYKERISFHMRMLNHYLKEQKNDRMGT
(restricted) Ga0233404_1001207353300022913SeawaterMDQLDTQTSTELEESTDFTLRDHHKERISFHMRMLNYYLKEQKNDRMGT
(restricted) Ga0233432_1005112113300023109SeawaterMDQLDTQTSTELEESTDFTLRDHHKERISFHMRMLNHYLKEQKNDRMGT
Ga0244777_1004684573300024343EstuarineTSTQLEESTDFTLRDHYNERISFHMRMLNHYLKEQKNDRMGT
Ga0244776_10002643113300024348EstuarineMNQSDTETSTQLEESTDFTLRDHYNERISFHMRMLNHYLKEQKNDRMGT
Ga0244776_1004219773300024348EstuarineMEQLNTLTLSQSEESMDFSLHDHYTERIKYHMTMLNYYLKEEKHDRMGD
(restricted) Ga0255048_1029962913300024518SeawaterMNQSDTETSTQSEESTDFTLRDHYNERISFHMRMLNHYLKEQKNDRM
(restricted) Ga0255046_1059641913300024519SeawaterMDQLDTQTSTELEESTDFTLRDHHKERISFHMRMLNYYLKEQKNDRMG
Ga0207896_1001350103300025071MarineMEQSNTLTLNRSEENTDFSLHDHYNERVKHHMIMLNYYLKEQKNDRMGN
Ga0207896_100263353300025071MarineMDQLDTQTSIELEENTDFTLRDHHKERISFHMRMLNHYLKEQKNDRMGT
Ga0207896_103594913300025071MarineMDQLDTQTSIELEESTDFTLHEHHKERISFHMRMLNHYLKEQKNDRMGT
Ga0208792_104544013300025085MarineMDQLDTLKLTESEESMDFSLHDHYKERIGYHMKMLNYYLKEEKNDRMGN
Ga0208157_107479023300025086MarineMDQSGMVTSNLSETNTDFTLREHYAERIKFHMNMLNYYLNEQTNDRMGN
Ga0209535_101160693300025120MarineMEQLNTLTLSQSEESMDFSLHDHYTERIKYHMTMLNYYLKEEKNDRMGD
Ga0209535_106703833300025120MarineMEQLDTLTLSQSEESMDFSLHDHYTERIKYHMTMLNYYLKEEKNDRMGN
Ga0209535_116210123300025120MarineMNQLDTETSTQSEESTDFTLHEHHKERISFHMRMLNHYLKEQKNDRMGT
Ga0209336_1006368713300025137MarineMEQLNTLTLNQSEENTDFLLRDHYAERIKYHMTMLNYYLKEEKNDRMGN
Ga0209336_1015208143300025137MarineTQLEENMGFTLYDHYKERIKHHMKMLNYYLKEQKNDRLGT
Ga0209336_1019478913300025137MarineMNQSNTETSTQLEENMGFTLYDHYKERIKHHMKMLNYYLKE
Ga0209634_101499993300025138MarineMEQLNTLTLNRSEENTDFSLHDHYNERVKHHMIMLNYYLKEQKNDRMGN
Ga0209634_109507553300025138MarineMEQLDTLTLNQSEESTDFSLHDHYTERIKYHMTMLNYYLKEEKHDRMGD
Ga0209337_114293663300025168MarineLTLNQSEENTDFLLRDHYAERIKYHMTMLNYYLKEEKNDRMGN
Ga0208032_110542433300025266Deep OceanMEQLNTQTSNLLEENMDFTLRDHHEERVKHHMKMLNYYLKEQKNDRMGD
Ga0209532_105703023300025696Pelagic MarineMEQLDTLTLSQSEESMDFLLRDHHAERIKHHMTMLNYYLKEQKNDWMGD
Ga0209482_1000698253300027668MarineMEQLNTQTSNLLEENMDFTLRDHHEERIRHHMKMLNYYLKEQKNDRMGD
Ga0209090_1001775983300027813MarineMDQLDTQTSTELEESTDFTLRDHYKERVSFHMRMLNHYLKEQKNERMGT
Ga0209271_1023186233300027845Marine SedimentMDQLDTQTSTELEESTDFTLRDHYEERISFHMRMLNHYLKEQKNDRMGT
Ga0209503_1018399313300027859MarineMDQSDILTSNLSETNTDFTLREHYNERIKFHMTMLNYYLKEQKNDRMGN
Ga0209404_1008241823300027906MarineMDQSDMMTSNLSETSTDFTLREHYAERIKFHMNMLNYYLNEQTDDRMGN
Ga0209404_1018549353300027906MarineMEQSDTLTSNLSETNTDFTLREHYNERIKFHMAMLNYYLKEQKNDRMGN
Ga0209404_1050942443300027906MarineMDQSDMMISNLSETNTDFTLREHYAERIKFHMNMLNYYLNEQANDRVGN
Ga0183755_1002425123300029448MarineMEQLDTLTLNQSEESMDFSLHDHYTERIQYHMTMLNYYLKEEKNDRMGN
Ga0308025_102834553300031143MarineMEQLDTQTSNLLEENMDFTLRDHHEERVKHHMKMLNYYLKEQKND
Ga0308025_105352153300031143MarineLDTQTSNLLEENMDFTLRDHHEERVKHHMKMLNYYLKEQKNDRMGD
Ga0307489_1009645153300031569Sackhole BrineMDQLDTQTSIKLEESTDFTLHEHHKERISFHMRMLNHYLKEQKNDRMGT
Ga0307489_1018576533300031569Sackhole BrineMNQLDTETSMQLEESTDFTLRDHHKERVSFHMRMLNHYLKEQKNDRMGN
Ga0307993_105141743300031602MarineMNQLDTKISIELEESTDFTLRDHHKERVSFHMRMLNHYLKEQKNDRMGT
Ga0302135_1000493143300031625MarineMEQLYTEPSTILEENMDFSLHKHHKERVEYHMKMLNYYLKEEYNDRLGN
Ga0307377_1067397843300031673SoilMDQLDTQTSTELEESTDFTLRDHHKERISFHMKMLNHYLNEQKNDRMGT
Ga0308011_1011746353300031688MarineQTSNLLEENMDFTLRDHHEERIRHHMKMLNYYLKEQKNDRMGN
Ga0315322_10004383123300031766SeawaterMDQLDTLKLTESEESMDFSLHDHYKERIGYHMKMLNYYLKEEKK
Ga0314858_120133_406_5553300033742Sea-Ice BrineMDQLDTQTSIELEESTDFTLHEHHKERISFHMRMLNHYLKEQKNDRMGN


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