Scaffold Ga0163180_10003532

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10003532
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8726
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F053549	Metagenome	141	Y
F064211	Metagenome	129	Y
F074152	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1000353219	F074152	N/A	MPTILGDNMKLLTTFLLIGTVDSKDEFFATVELNMNPATSQPGHAVMPISAFPCEIKEGDTFYILKLTERTDPVIICKETQGEKKSNNGD*
Ga0163180_1000353223	F064211	GAGG	MRAGQVKVWLDQGPAVLLEQCEVEGESIALDEVDDVVPTSEKGWVIHLLQTGEMLTVHEETLHNGERDV*
Ga0163180_100035327	F018267	GGTGG	VRIGDLISFKPKSFGDDDWSNPCIVLDAFVNDDRRGGGFKDTIYVVWCDGYKHMVNPRNDDIMYLTSSSLLKA*
Ga0163180_100035328	F053549	AGG	VKVGDLVKWESVLNDSMDHYSVDYGIVIKMSRTGHKTNSAEVLFSDGDIQWFDTERLVVVSANR*