Scaffold Ga0163108_10095019

Overview

Basic Information

• Taxon OID: 3300012950
• Scaffold ID: Ga0163108_10095019
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1897
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087780	Metagenome	110	Y
F090259	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163108_100950192	F090259	GGAGG	MIKGKLYEVRHNWLLPRDNHEFWSTCGPVLYLGEDVIEREDGVRIVNHAVLVKGQRRILDRTFLRFLEPLTNT*
Ga0163108_100950196	F087780	AGG	MKVGDLVKVSFGPNEKTTTGIFIRDDTCATGLDKDGWPIITRVFVLWDGEVYSTPLDQVEILNESR*