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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012950 Open in IMG/M |
| Scaffold ID | Ga0163108_10002661 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12860 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (65.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | The Central Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 10.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 155 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010950 | Metagenome | 297 | Y |
| F016324 | Metagenome | 248 | Y |
| F037424 | Metagenome | 168 | Y |
| F053548 | Metagenome | 141 | Y |
| F053549 | Metagenome | 141 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0163108_100026611 | F010950 | N/A | QTCLYDHDTYVSTHMTEKGALITAIRAVREDLCDGFDEDELEDMREGMPHNHEEDLMQYDRKQLQGIVQDWWEYSFDINEHAQYQIHQTQVEA* |
| Ga0163108_1000266134 | F037424 | N/A | MWSEGVKRHEDSPTQAQYHTERAERYRIMYIKRTKIDPATGEKVKNKVAKAERMKNVTCGYCQETGHTRRICEVVKRDKLVFIEASRRCRAAAFEDAVNRGMGVGSMVPIRTHGYHGPDNEWGMYTSLRYVKSVDWKSVTSARPSLWVTHIEATKLAAPNQNQWTSRDNVAKMLENFEDARGIAAAEGQKTPPASLIPSLDPPAGWLECEPSTIDVASVFPTKGGKYDKQRQHTYSWPSGITADVIRDLGLEEHWKGRF* |
| Ga0163108_1000266136 | F016324 | GGCGG | MHSRARRPPLRPPQIGDIVRLSGPGGIGRLYKHVHGVGIVTKIDKPPDRRIEYEVKWLKSEERMRFNEEDLIVLSDVDR* |
| Ga0163108_100026614 | F053548 | AGG | MKDSGAPSIGDLVVALYDEQRDISCVGLVMETRGIECRVQWVSENNPIGWWARQALKVVSPSGKTEKV* |
| Ga0163108_100026616 | F053549 | GGAGG | MKVGDLVKWMTVLNDDMNRYQEELGLVIKMSRTGHNTESAQVLFNDGETWWVDTQRLVVINESR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |