Scaffold Ga0164229_101738

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0164229_101738

Scaffold Ga0164229_101738

Overview

Basic Information
Taxon OID	3300012945 Open in IMG/M
Scaffold ID	Ga0164229_101738 Open in IMG/M
Source Dataset Name	Dysideidae sponge tissue microbial communities from Piti Bomb Holes, Guam, USA - SP5 SP5_idba_062615
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, San Diego, Scripps Institute of Oceanography
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6521
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (10.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Sponge → Unclassified → Unclassified → Sponge Tissue → Guam Dysideidae Sponge Holobiont Metagenomes

Source Dataset Sampling Location
Location Name	Guam, USA
Coordinates	Lat. (^o)	13.345738	Long. (^o)	144.638186	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024317	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164229_10173812	F024317	N/A	MNYEEMDEEFASLVKMAWDSQMEVEVIFEALKTMQLHPHATPKLALQIGLSEWDK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.