Scaffold Ga0164241_10829095

Overview

Basic Information

• Taxon OID: 3300012943
• Scaffold ID: Ga0164241_10829095
• Source Dataset Name: Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 674
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087726	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164241_108290952	F087726	GAG	MPRAVILLILVVLVLVGLMFFFSRQADEVPTRTIEVEVNQPANAQ*