Metagenome Family F087726

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087726
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	44 residues
Representative Sequence	MPRAVIVLLVLVLVLVGLMFFFSSQADEVPTNTIEVEVNAPANAN
Number of Associated Samples	70
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.82 %
% of genes near scaffold ends (potentially truncated)	34.55 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (33.636 % of family members)
Environment Ontology (ENVO)	Unclassified (59.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (40.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.88% β-sheet: 0.00% Coil/Unstructured: 67.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01202	SKI	51.82
PF02254	TrkA_N	2.73
PF01406	tRNA-synt_1e	1.82
PF13541	ChlI	0.91
PF02899	Phage_int_SAM_1	0.91
PF01476	LysM	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.82
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.82
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.82
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.91
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.82 %
Unclassified	root	N/A	8.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.82 %
Unclassified	root	N/A	8.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.82 %
Unclassified	root	N/A	8.18 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	88.18 %
Unclassified	root	N/A	8.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	88.18 %
Unclassified	root	N/A	8.18 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	80.00 %
Unclassified	root	N/A	8.18 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.82 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	78.18 %
Unclassified	root	N/A	8.18 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	64.55 %
Unclassified	root	N/A	8.18 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	9.09 %
Unclassified	root	N/A	8.18 %
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	4.55 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	9.09 %
Unclassified	root	N/A	8.18 %
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	4.55 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	9.09 %
Unclassified	root	N/A	8.18 %
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	4.55 %
Pseudonocardia sp. TRM90224	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. TRM90224	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309009\|GPKNP_F5JHDJD02G74FK	Not Available	521	Open in IMG/M
3300002076\|JGI24749J21850_1084190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	502	Open in IMG/M
3300003312\|P12013IDBA_1003297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	9898	Open in IMG/M
3300003312\|P12013IDBA_1012586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3827	Open in IMG/M
3300003312\|P12013IDBA_1022264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2299	Open in IMG/M
3300004114\|Ga0062593_101755877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300004156\|Ga0062589_101843611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	608	Open in IMG/M
3300004479\|Ga0062595_100011366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2955	Open in IMG/M
3300005093\|Ga0062594_100650519	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300005328\|Ga0070676_11311765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	553	Open in IMG/M
3300005333\|Ga0070677_10120581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1184	Open in IMG/M
3300005353\|Ga0070669_100113676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2057	Open in IMG/M
3300005353\|Ga0070669_100197268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1582	Open in IMG/M
3300005354\|Ga0070675_100742962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	895	Open in IMG/M
3300005355\|Ga0070671_100253886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1494	Open in IMG/M
3300005457\|Ga0070662_100762583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	821	Open in IMG/M
3300005548\|Ga0070665_102561605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	511	Open in IMG/M
3300005719\|Ga0068861_102064596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	569	Open in IMG/M
3300005985\|Ga0081539_10079155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1733	Open in IMG/M
3300006169\|Ga0082029_1189868	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300006169\|Ga0082029_1419503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	12572	Open in IMG/M
3300006865\|Ga0073934_10279394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1079	Open in IMG/M
3300007004\|Ga0079218_10976910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	844	Open in IMG/M
3300009094\|Ga0111539_13030908	Not Available	543	Open in IMG/M
3300009789\|Ga0126307_10424514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1072	Open in IMG/M
3300009789\|Ga0126307_10473289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1011	Open in IMG/M
3300010045\|Ga0126311_10565957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	896	Open in IMG/M
3300012900\|Ga0157292_10341296	Not Available	550	Open in IMG/M
3300012943\|Ga0164241_10829095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	674	Open in IMG/M
3300012951\|Ga0164300_11010628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	536	Open in IMG/M
3300015371\|Ga0132258_10054999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	9135	Open in IMG/M
3300015371\|Ga0132258_10104877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	6674	Open in IMG/M
3300015371\|Ga0132258_12019377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1450	Open in IMG/M
3300015372\|Ga0132256_100495341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1332	Open in IMG/M
3300018432\|Ga0190275_13072958	Not Available	540	Open in IMG/M
3300018465\|Ga0190269_10860482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	663	Open in IMG/M
3300018465\|Ga0190269_11265192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	586	Open in IMG/M
3300018466\|Ga0190268_10140104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1213	Open in IMG/M
3300018466\|Ga0190268_10143873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1204	Open in IMG/M
3300018476\|Ga0190274_12145999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	655	Open in IMG/M
3300018481\|Ga0190271_10004573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	8948	Open in IMG/M
3300018481\|Ga0190271_12864741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	579	Open in IMG/M
3300019377\|Ga0190264_10311152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	961	Open in IMG/M
3300020202\|Ga0196964_10391495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300022756\|Ga0222622_10830350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	676	Open in IMG/M
3300025903\|Ga0207680_11051311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	583	Open in IMG/M
3300025907\|Ga0207645_10632311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	727	Open in IMG/M
3300025907\|Ga0207645_11015482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	561	Open in IMG/M
3300025923\|Ga0207681_10102483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2067	Open in IMG/M
3300025923\|Ga0207681_10896906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	742	Open in IMG/M
3300025926\|Ga0207659_10658645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	895	Open in IMG/M
3300025930\|Ga0207701_11093163	Not Available	661	Open in IMG/M
3300025931\|Ga0207644_10251906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1409	Open in IMG/M
3300025931\|Ga0207644_11028256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	692	Open in IMG/M
3300025933\|Ga0207706_11182510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. TRM90224	636	Open in IMG/M
3300025940\|Ga0207691_10922343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	731	Open in IMG/M
3300025941\|Ga0207711_11505392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	616	Open in IMG/M
3300025945\|Ga0207679_10180610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1745	Open in IMG/M
3300025972\|Ga0207668_11428872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	624	Open in IMG/M
3300027614\|Ga0209970_1040001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300027886\|Ga0209486_11074335	Not Available	545	Open in IMG/M
3300028379\|Ga0268266_12040707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	547	Open in IMG/M
3300028587\|Ga0247828_11099861	Not Available	526	Open in IMG/M
3300028590\|Ga0247823_10221774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1434	Open in IMG/M
3300028889\|Ga0247827_10515834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	750	Open in IMG/M
3300031538\|Ga0310888_11110824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	500	Open in IMG/M
3300031548\|Ga0307408_100011886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	5759	Open in IMG/M
3300031548\|Ga0307408_100161672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1779	Open in IMG/M
3300031548\|Ga0307408_100814755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	848	Open in IMG/M
3300031548\|Ga0307408_101262679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	691	Open in IMG/M
3300031548\|Ga0307408_101390241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	660	Open in IMG/M
3300031548\|Ga0307408_101491308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	639	Open in IMG/M
3300031731\|Ga0307405_10055811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2474	Open in IMG/M
3300031731\|Ga0307405_10067038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2291	Open in IMG/M
3300031731\|Ga0307405_10502228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	972	Open in IMG/M
3300031731\|Ga0307405_10764215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	806	Open in IMG/M
3300031731\|Ga0307405_10791828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	793	Open in IMG/M
3300031731\|Ga0307405_11347747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	622	Open in IMG/M
3300031731\|Ga0307405_11412627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	609	Open in IMG/M
3300031731\|Ga0307405_12097506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	507	Open in IMG/M
3300031824\|Ga0307413_10131632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1713	Open in IMG/M
3300031824\|Ga0307413_10156155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1596	Open in IMG/M
3300031824\|Ga0307413_10265396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1282	Open in IMG/M
3300031824\|Ga0307413_10784836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	799	Open in IMG/M
3300031824\|Ga0307413_11010956	Not Available	713	Open in IMG/M
3300031824\|Ga0307413_11134179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	677	Open in IMG/M
3300031824\|Ga0307413_11826415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	544	Open in IMG/M
3300031852\|Ga0307410_10010782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	5198	Open in IMG/M
3300031852\|Ga0307410_10129717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1851	Open in IMG/M
3300031852\|Ga0307410_10186324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1575	Open in IMG/M
3300031852\|Ga0307410_11761256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	550	Open in IMG/M
3300031854\|Ga0310904_10284914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1040	Open in IMG/M
3300031901\|Ga0307406_10795401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	798	Open in IMG/M
3300031903\|Ga0307407_10545153	Not Available	856	Open in IMG/M
3300031903\|Ga0307407_10920661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300031995\|Ga0307409_100135658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2111	Open in IMG/M
3300031995\|Ga0307409_100629230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1064	Open in IMG/M
3300031995\|Ga0307409_101733188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	653	Open in IMG/M
3300032000\|Ga0310903_10593608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	589	Open in IMG/M
3300032004\|Ga0307414_11312153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	672	Open in IMG/M
3300032004\|Ga0307414_11431773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	642	Open in IMG/M
3300032005\|Ga0307411_10149293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1735	Open in IMG/M
3300032005\|Ga0307411_10651863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	912	Open in IMG/M
3300032005\|Ga0307411_11292384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	664	Open in IMG/M
3300032012\|Ga0310902_10427882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	849	Open in IMG/M
3300032013\|Ga0310906_11379577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	517	Open in IMG/M
3300032075\|Ga0310890_10833754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	732	Open in IMG/M
3300032126\|Ga0307415_100733410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	895	Open in IMG/M
3300032179\|Ga0310889_10112873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1174	Open in IMG/M
3300033412\|Ga0310810_10685971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	957	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.82%
Environmental	Environmental	38.18%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.82%
Terrestrial	Environmental → Terrestrial	36.36%
Aquatic	Environmental → Aquatic	1.82%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	55.45%
Soil	Environmental → Terrestrial → Soil	36.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.36%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.91%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	35.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	20.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Sand	Environmental → Terrestrial → Soil → Sand	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	35.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	20.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.09%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.91%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	33.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.64%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.73%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.73%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.91%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300003312	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKNP_03772450	2070309009	Soil	MPRGFIVLILLVLVIAGLLWFFSSQADEVPTNTIEV
JGI24749J21850_10841902	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	MPRAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVN
P12013IDBA_10032973	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MPRAILVLVVLVLAVLALLWFLSRSAGEVPTRTIEVGVNAPADAR*
P12013IDBA_10125863	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MPRAAILIFFVLLVVLGLLWFLSSQAEEVPTRTIEVEVNAPANAG*
P12013IDBA_10222642	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MPRAILILLLLVLAVAGLLWFLSGSAREVPTRTIEAEVDAPADAR*
Ga0062593_1017558772	3300004114	Soil	MPRAVIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS*
Ga0062589_1018436111	3300004156	Soil	MPRAVILLILVVLVLLGLLFFFSHHASEQPTRTMEAEVNQPANAQ*
Ga0062595_1000113662	3300004479	Soil	MPRAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPANAS*
Ga0062594_1006505192	3300005093	Soil	MPRAVIVLVVLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS*
Ga0070676_113117651	3300005328	Miscanthus Rhizosphere	MPRAVILLIVVLLLVVGLLFFFSSRANEVPTRAIEVEVNAPANAS*
Ga0070677_101205813	3300005333	Miscanthus Rhizosphere	MPRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPAN
Ga0070669_1001136762	3300005353	Switchgrass Rhizosphere	MPRAVIVLLVLVLLVVGLMFFFSSRAGEQPTKTIEVEVNQPANAS*
Ga0070669_1001972681	3300005353	Switchgrass Rhizosphere	TMPRAVILLIVVLLLVVGLLFFFSSRANEVPTRAIEVEVNAPANAS*
Ga0070675_1007429621	3300005354	Miscanthus Rhizosphere	VPIPKDASAMPRAVIVLVVLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS*
Ga0070671_1002538863	3300005355	Switchgrass Rhizosphere	MPRAVILLILVVLVLLGLMFFFSHHAGEKPTRTIEVEVNQPANAQ*
Ga0070662_1007625832	3300005457	Corn Rhizosphere	MPRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ*
Ga0070665_1025616051	3300005548	Switchgrass Rhizosphere	MPRAIIVLLLIVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN*
Ga0068861_1020645961	3300005719	Switchgrass Rhizosphere	RAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPANAS*
Ga0081539_100791552	3300005985	Tabebuia Heterophylla Rhizosphere	MPRAVLVLIALLVLVAALLAFLSTRAREVPTNTIEVEVNAPANAR*
Ga0082029_11898681	3300006169	Termite Nest	MPRAVIVLLLLVLVIAGLMWFFSSQADEVPTNRIEVEVNAPANAS*
Ga0082029_14195039	3300006169	Termite Nest	MPRAVIVLLVLFVLIVGLLWFFSSRATDVPAHTIEVEVNAPANAR*
Ga0073934_102793942	3300006865	Hot Spring Sediment	MPRAVIFLLVLVLLVVGLMFFFSSQADEVPTNTIEVEVNAPANAN*
Ga0079218_109769102	3300007004	Agricultural Soil	MPRAVIVLLVLVLLIVGLMFFFSSRAVEVQPSTIEVEVNAPANAN*
Ga0111539_130309082	3300009094	Populus Rhizosphere	MPRAVILLILVVIVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ*
Ga0126307_104245142	3300009789	Serpentine Soil	LVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPANAN*
Ga0126307_104732891	3300009789	Serpentine Soil	MPRAVIVLLVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPANAN*
Ga0126311_105659573	3300010045	Serpentine Soil	MPRALIVLLVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPANAN*
Ga0157292_103412962	3300012900	Soil	VLVLLGLLFFFSHHASEQPTRTMEAEVNQPANAQ*
Ga0164241_108290952	3300012943	Soil	MPRAVILLILVVLVLVGLMFFFSRQADEVPTRTIEVEVNQPANAQ*
Ga0164300_110106281	3300012951	Soil	QTRVKMPRAVIVLLVLVLLVAGLMFFFSSRAGEVPTKTIETEVTAPANAS*
Ga0132258_100549999	3300015371	Arabidopsis Rhizosphere	MPRAIILLIVVLLLFVGLLFFFSSRANEVPTRAIEVEVNAPANAS*
Ga0132258_101048775	3300015371	Arabidopsis Rhizosphere	MPRAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPGNAS*
Ga0132258_120193772	3300015371	Arabidopsis Rhizosphere	MPRAVIILLVLVLVLVGLMFFFSSQAEEVQPSTIEVEVNAPANAN*
Ga0132256_1004953412	3300015372	Arabidopsis Rhizosphere	MPRAVILLILVVLVLLGLMFFFSHHAGEKPTRAIEVEVNQPANAQ*
Ga0190275_130729581	3300018432	Soil	MPRGFIVLLLLLLVILGLIWFFSSQADEVPTNTIEV
Ga0190269_108604822	3300018465	Soil	MPRAVIFLLVLVLLLVGLMFFFSSQADEVPTNTIEVEVNAPANAN
Ga0190269_112651922	3300018465	Soil	LVLVIAGLLWFFSSQADEVPTNTIEVKVHAPANAN
Ga0190268_101401042	3300018466	Soil	MPRGFIVLLLLLLVILGLMWFFSSQADEVPTNTIEVEVIAPANAN
Ga0190268_101438733	3300018466	Soil	MPRGFIVLILLVLVIAGLMWFFSSQADEVPTNTIEVEVNAPANAN
Ga0190274_121459992	3300018476	Soil	MPRAVIVLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ
Ga0190271_100045738	3300018481	Soil	MPRAVIVLLVLVLLLVGLMFFFSSQADEVPTSTMEVEVNAPANAN
Ga0190271_128647412	3300018481	Soil	MPRGFIVLLLLLLVILGLMWFFSSQADEVPTNMIEVEVNAPANAN
Ga0190264_103111521	3300019377	Soil	MPRGFIVLILLVLVIAGLLWFLSSQADEVPTNTIEVEV
Ga0196964_103914952	3300020202	Soil	MPRAVLFLTLLLILIVGLLWFFSSQAEEVPTRTIEIEVNSSANAS
Ga0222622_108303502	3300022756	Groundwater Sediment	MPRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ
Ga0207680_110513112	3300025903	Switchgrass Rhizosphere	MPRAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPANAS
Ga0207645_106323112	3300025907	Miscanthus Rhizosphere	MPRAVILLIVVLLLVVGLLFFFSSRANEVPTRAIEVEVNAPANAS
Ga0207645_110154821	3300025907	Miscanthus Rhizosphere	AVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPANAS
Ga0207681_101024832	3300025923	Switchgrass Rhizosphere	MPRAVIVLLVLVLLVVGLMFFFSSRAGEQPTKTIEVEVNQPANAS
Ga0207681_108969061	3300025923	Switchgrass Rhizosphere	RAVIILLVLVLVLVGLMFFFSSQAEEVQPSTIEVEVNAPANAN
Ga0207659_106586452	3300025926	Miscanthus Rhizosphere	VPIPKDASAMPRAVIVLVVLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS
Ga0207701_110931632	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MLRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ
Ga0207644_102519062	3300025931	Switchgrass Rhizosphere	MPRAVILLILVVLVLLGLMFFFSHHAGEKPTRTIEVEVNQPANAQ
Ga0207644_110282562	3300025931	Switchgrass Rhizosphere	MPRALIVLLVILLVIAGLMFFFSSRAGEVPTRTIETEVNAPANAS
Ga0207706_111825101	3300025933	Corn Rhizosphere	VLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS
Ga0207691_109223432	3300025940	Miscanthus Rhizosphere	MPRAVILLILVVLVLLGLLFFFSHHASEQPTRTMEAEVNQPANAQ
Ga0207711_115053921	3300025941	Switchgrass Rhizosphere	MPRAVIVLVVLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS
Ga0207679_101806102	3300025945	Corn Rhizosphere	RPKQTRVKMPRAVIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS
Ga0207668_114288722	3300025972	Switchgrass Rhizosphere	LLLIVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN
Ga0209970_10400012	3300027614	Arabidopsis Thaliana Rhizosphere	MPRAVIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS
Ga0209486_110743352	3300027886	Agricultural Soil	MPRAVIVLLVLVLLIVGLMFFFSSRAVEVQPSTIEVEVNAPANAN
Ga0268266_120407071	3300028379	Switchgrass Rhizosphere	MPRAIIVLLLIVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN
Ga0247828_110998612	3300028587	Soil	PVSHLPNSMRVPMPRAVIVLIVLLILIVGLLWFFSSRATDVPARTIEVEVNAPANAR
Ga0247823_102217742	3300028590	Soil	MPRAVIVLIVLLILIVGLLWFFSSRATDVPARTIEVEVNAPANAR
Ga0247827_105158342	3300028889	Soil	MPRAVIVLLVLVLLVAGLMFFFSSRAGEVPTKTIETEVTAPANAS
Ga0310888_111108242	3300031538	Soil	MPRAVIVLLVLVLLVAGLMFFFSSRAGEVPTKTIETEVTAP
Ga0307408_1000118863	3300031548	Rhizosphere	MPRAVIVLIVLLALIVGLLWFFSSRANDVPARTIEVEVNAPANAR
Ga0307408_1001616723	3300031548	Rhizosphere	MPRGFIVLILLVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN
Ga0307408_1008147551	3300031548	Rhizosphere	MPRAVIVLLVLVLILAGLMFFFSRQAGEVPTKTIETEVTAPAN
Ga0307408_1012626792	3300031548	Rhizosphere	MPRAVIVLLVLVLLLVGLMFFFSSRAGEVPTKTIETEVTAPANAS
Ga0307408_1013902411	3300031548	Rhizosphere	VLLIIVVLLIVGLLFFFSSRADEVPTRTIEVEVNAPANAS
Ga0307408_1014913081	3300031548	Rhizosphere	IVLILLVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN
Ga0307405_100558111	3300031731	Rhizosphere	THRRRVPMPRGFIVLILLVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN
Ga0307405_100670381	3300031731	Rhizosphere	MPRGFIVLILLVLVIAGLLWFFSSQADEVPTNTIEVE
Ga0307405_105022282	3300031731	Rhizosphere	MPRAVIVLLVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPANAN
Ga0307405_107642152	3300031731	Rhizosphere	MPRAVIVLLVLVLLIVGLTFFFSSRAEEVQPSTIEVEVNAPANAN
Ga0307405_107918281	3300031731	Rhizosphere	MPRAVIVLLVLVLILAGLMFFFSRQAGEVPTKTIETEVTAPANAS
Ga0307405_113477471	3300031731	Rhizosphere	VIVLLLLLLVMLGLMWFFSSQADEVPTNTIEVEVNAPANAN
Ga0307405_114126272	3300031731	Rhizosphere	MPRAIIVLLLIVMVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN
Ga0307405_120975061	3300031731	Rhizosphere	MPRAVIVLILVILAIAGLMIFFSSRADEVPTRTIEVEVNTTANAS
Ga0307413_101316322	3300031824	Rhizosphere	MPRAVIVLLLLVLVLGGLTWFFSSQADEVPTNIVEVEVNTPANAN
Ga0307413_101561551	3300031824	Rhizosphere	RAAKARVPSANSMRVTMPRAVIVLIVLLALIVGLLWFFSSRANDVPARTIEVEVNAPANA
Ga0307413_102653962	3300031824	Rhizosphere	VIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS
Ga0307413_107848362	3300031824	Rhizosphere	MPRAVIVLLVLILVLVGLMFFFSSQADEVPTNTIEVEVNAPANAN
Ga0307413_110109562	3300031824	Rhizosphere	MPRGFIVLILIVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN
Ga0307413_111341792	3300031824	Rhizosphere	MSRGLTLLILLVIVIAGLLWFLAGSADEVPTRTIEVDVNAPANAN
Ga0307413_118264152	3300031824	Rhizosphere	MPRALILLILLLLVVVGLLFFFSSQAEEVPVQPIEIEVNTPADAR
Ga0307410_100107825	3300031852	Rhizosphere	MPRAVIVLIFLLILIVGLLWFFSSRATDVPARTIEVEVNAPANAR
Ga0307410_101297173	3300031852	Rhizosphere	MPRAVIVLIVLLVLIVGLLWFFSSRATDVPARTIEVEVNAPANAR
Ga0307410_101863242	3300031852	Rhizosphere	MPRAVIVLLVLVLVLVGLMFFFSSQADEVPTNTIEVEVNAPANAN
Ga0307410_117612562	3300031852	Rhizosphere	MPRAVILLILVVLVLLGLIFFFSHNAGEEPTRTIEVEVNQPANAQ
Ga0310904_102849143	3300031854	Soil	MPRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQLANAQ
Ga0307406_107954012	3300031901	Rhizosphere	MPRGFIVLLLLLLVILGLMWFFSSQADEVPTNTIEVEVNAPANAN
Ga0307407_105451532	3300031903	Rhizosphere	MRVTMPRAVIVLIVLLVLIVGLLWFFSSRATDVPARTIEVEVNAPANAR
Ga0307407_109206612	3300031903	Rhizosphere	MPRAVIVLLVLVLLVVGLMFFFSSRAGEVSTKTIETEVTAPANAS
Ga0307409_1001356582	3300031995	Rhizosphere	MPRAVIFLIVFVLLVVGLLWFLSGRASEVPTNTIEVEVNAPANAR
Ga0307409_1006292301	3300031995	Rhizosphere	LVLALGGLTWFFSSQADEVPTNIVEVEVNTPANAN
Ga0307409_1017331881	3300031995	Rhizosphere	LIIVVLLIVGLLFFFSSRADEVPTRTIEVEVNAPANAS
Ga0310903_105936082	3300032000	Soil	RAVIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS
Ga0307414_113121531	3300032004	Rhizosphere	MPRAVIVLLVLVLLLVGLMFFFSSRAGEVPTKTIETDVTAPANAS
Ga0307414_114317731	3300032004	Rhizosphere	QKRSHSRPKQTRVKMPRAVIVLLVLVLILAGLMFFFSRQAGEVPTKTIETEVTAPANAS
Ga0307411_101492932	3300032005	Rhizosphere	MPRAVIVLLVLVLVLVGLMFFFSSQADEVPTSTVEVEVNAPANAN
Ga0307411_106518631	3300032005	Rhizosphere	FATRVKMPRAVIVFLVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPAHAN
Ga0307411_112923841	3300032005	Rhizosphere	FIVLILLVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN
Ga0310902_104278821	3300032012	Soil	MPRALLVLLVILLVIAGLMFFFSSRAGEVPTRPIETEVNAPANAS
Ga0310906_113795771	3300032013	Soil	VILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQLANAQ
Ga0310890_108337542	3300032075	Soil	MPRALLVLLVILLVIAGLMFFFSSRAVEVPTRPIETEVNAPANAS
Ga0307415_1007334102	3300032126	Rhizosphere	RAPMPRGFIVLLLIILVIAGLLWFFSSQADEVPTNTIEVEVNAQANAN
Ga0310889_101128732	3300032179	Soil	TDASTMPRALLVLLVILLVIAGLMFFFSSRAGEVPTRPIETEVNAPANAS
Ga0310810_106859711	3300033412	Soil	MPRAVIALIVILLVIVGLFFLLSRQAGEVPTKTIEVEVNQPANAH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087726

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences