Scaffold Ga0163109_10004080

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10004080
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11135
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029599	Metagenome / Metatranscriptome	188	Y
F063601	Metagenome	129	Y
F080233	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_100040801	F063601	N/A	KTALMIIAFFTVPGIIMGLVSSYRAGQTPIGDLYRRLRGIARRKRR*
Ga0163109_1000408024	F029599	N/A	MKSYFILDCDTQQKIADSLYGYYVGITANNKPTGFWNKLSRQQIVDYFSIPNNPTKKWFDKLGLKVRDMSYTIYNEDITTDIHKDEPPVVAKINFPVLNTKDTYNVWFD
Ga0163109_100040805	F080233	N/A	MFYIWHTLIIVTFIAVAYQMGYLYGKGQNKVKKTVRKS*