Scaffold Ga0157211_1000006

Overview

Basic Information

• Taxon OID: 3300012933
• Scaffold ID: Ga0157211_1000006
• Source Dataset Name: Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102069
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 106 (63.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.33257
  • Long. (^o): -78.9405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F015601	Metagenome / Metatranscriptome	253	Y
F032284	Metagenome / Metatranscriptome	180	Y
F073553	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157211_1000006104	F015601	GGAG	MAGYSRDFLIDAFMSRYIKCTLISIESLVRLEQMANDLYDRVGRDSFRTYASLDATALRVYKNSLE*
Ga0157211_100000645	F032284	N/A	MTKDTYFEMCEMLNTPVVEADIPVEFDDFPLEVQQAFGVYRMLRDEWDTMNGNYLGKSLIGIADLLEAAEIEPQEKKFITMLVRLIDDVRSNEINKLKAQEPAK*
Ga0157211_100000671	F073553	AGGAGG	MTDNEFFAQIQDDWFHEFVGAQRHEIFVCTNPQVENFEFDDIPF*
Ga0157211_100000673	F004133	AGGAG	MKYTKEICDRLVADYQAGVPVHQLAQQLDLPERSIIAKLSSLGVYQKKSYVNKRGEIPVKKSEHIERIATLLDCDLELLESLEKVNKVVLKLIESRLSDPKSP*