Scaffold Ga0137404_10035739

Overview

Basic Information

• Taxon OID: 3300012929
• Scaffold ID: Ga0137404_10035739
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3713
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F004392	Metagenome / Metatranscriptome	440	N
F066496	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137404_100357391	F066496	AGAAG	VVLIVALVLGAFVDRITALKIAAGVVLLWTLQNQPVVFECIRKLFSFVQRRPSVREY
Ga0137404_100357392	F004392	AGGA	MPVNGPETIADSKPSQPVPSEGRSVRAARNAKPAVGRGASTRRRRDRQDSSETNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLHKVTEFQTRADIGRSGEPILRKETLKKNNPAS*
Ga0137404_100357393	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYDVLMILIVIVIYSSVPRLLRGAGLSDGTVGILPLILFAAGILLKPRAVQFIERRRKDRKAETHDGRPHMDAGEKQEIARKETVERCQ*