Scaffold Ga0163110_10003171

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10003171
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8606
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018008	Metagenome / Metatranscriptome	237	Y
F018084	Metagenome	237	Y
F064453	Metagenome / Metatranscriptome	128	Y
F089045	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_1000317110	F089045	GGAG	MKDFMKNKKVWIGAAIVVIIFAWALWSGSPAPVEAQ*
Ga0163110_1000317117	F064453	AGGA	MIYTDQENEWLSKPKKYKKSNRNKQRKVEQTEWDCKGGHWFVNPTRAWGIKTTIEVDGKEYVVPVQL*
Ga0163110_1000317119	F018084	GGA	MVKTALIIICIFVIPGTIAGVISSYRAGQKPHRDLYLRFKKFAQRKNK*
Ga0163110_100031719	F018008	N/A	MDIFNSKKFIVFMLILLVWAGLHGCSPKEDPTKQTPHETVKEMNDKITKEMDAMDKEQSQNDSPGPTNFEGIADALGCMFAPNDCPLKKRQEEQKLDR*