Scaffold Ga0160423_10005244

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10005244
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10570
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F037204	Metagenome	168	N
F067203	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000524416	F003073	GGAG	MPKKLENMTQDERIAYWENVREKEHINRRNRIAKLSMEQRAAVISVHNLLDSVLDVALYPDMGGIRAVSAFDLQELSEAMETLRFQFNLRD*
Ga0160423_100052446	F067203	AGGTGG	MTIKWKEIEASGLSEKDKQYMVMYGCTQDDMVAMMNDPMNFIGGHYMLAMSILSDAQECIAYKPDQARQFINKAKYVLRQWKIDNE*
Ga0160423_100052448	F037204	AGGAG	MFDVNVYKDLSMYDFAGVEHYDVQQVIDHLQFILDTDQMILTTEE*