Scaffold Ga0160423_10000118

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10000118
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56210
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (31.34%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029108	Metagenome / Metatranscriptome	189	Y
F031064	Metagenome / Metatranscriptome	183	Y
F035765	Metagenome	171	Y
F042280	Metagenome / Metatranscriptome	158	Y
F064621	Metagenome	128	Y
F072343	Metagenome / Metatranscriptome	121	Y
F082523	Metagenome	113	Y
F092065	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_10000118118	F031064	N/A	MIKNKTHFKKGDVLVSRDNKVFQFIQAVEHEELGMIAMVRPYRTNRKVGIRFEDVKLHPLFA*
Ga0160423_10000118119	F064621	N/A	MLNKKVKEFIQDNGLVRIQASPMSEAFDLWECPGGHVWTLEMIEQAVK*
Ga0160423_1000011834	F035765	GAGG	MINGLVKDILADFQSVTWTEEYEELKQEIFYDIIKQEKCWYCGVGEIKDMDHFVPTNGRLFDPPMFGLEHEGNIIPSCKICNSNKSNKHPIVWLKKGRVTKGKEFDFPKERIELFELFFDLFKEKLIADESLTNIIIKQAIPKCESLTNQLADYRSWIKL*
Ga0160423_1000011856	F082523	N/A	MSGEAHSAFFRRTSETKKSNTQLCKIFERIILASPVKTHMKFYPDSVGQVHLYEKGGEDVPKWMEKDLRFDGTFELMISTYESWYEDADLYEGEREDSFLSLAKKFADLYSLNYYKRGVYELEDELEKKGLTESKK*
Ga0160423_1000011867	F042280	GGAG	MKITNKWEETFEVNVGDYVGFKCDIEQIGRVKEIQRRGALIVENKNGFDGDYIGGDTEALVGFDEVWKED*
Ga0160423_1000011878	F092065	GGAG	MQEIIDKIYERMEYCAYAHTNDQAEEQRFILELSCLNEILDKIETFPWDNEEVN*
Ga0160423_1000011887	F072343	GAG	MHVRREIDEILDQINEIITTSEMQGGVDNQDKTELQQLFDEINKKTLNGERAKGMWTESPEFNYIK*
Ga0160423_1000011888	F029108	N/A	MNMNKYLIGKKKLGKGMRGAKGGVATPTGAFGGKSKFNKKRLDNSK*