Basic Information | |
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Taxon OID | 3300012919 Open in IMG/M |
Scaffold ID | Ga0160422_10735720 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 631 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | The Central Pacific Ocean | |||||||
Coordinates | Lat. (o) | 10.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 60 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F033049 | Metagenome | 178 | Y |
F092189 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0160422_107357201 | F033049 | N/A | PLINHPVVQAGSNFGSGNNEVAPKQRGLMLKRGQALYVAASGSTALTTGFYCNVQGGYY* |
Ga0160422_107357202 | F092189 | AGGTGG | MPFGVKDFSNPSRIGFNTKFSRKLEDADQFNKPAKWEKDSQPFGVGRKTKNYKNSEINFYNTDSLWSRWRRGYELYTATQSFLGSTASERSKRGDYRVYFTFQQYPGVFIPARIYTFPSVNQELGEQLVGMRVTDAFSFYEHGLPILA |
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