Scaffold Ga0160422_10023932

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10023932
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3541
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024331	Metagenome / Metatranscriptome	206	Y
F033075	Metagenome	178	Y
F078838	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100239324	F033075	AGGAG	MTQDYNPMQAVYKCVLSTYNPLEIKDILLHGASRKATKHRAEEDIITFYANHNEGIHHELLDAKSKYCQDYLYMQYCYNMTDKTQEDQFEFLKDVVWLYIDKVADELADEYKLHDKPRKEIEDEVLAIELAHRKNQLQVIDGGKK*
Ga0160422_100239325	F078838	GGAGG	MPFNTYIDDRAMIPVLLEHDWMIWKDTWTDCSYETYMALKKKARHTGNAKVLDY*
Ga0160422_100239328	F024331	AGTAG	MRDDVPDYPNIKPLYMLIKVEVDADIVHNQDKAEAYAENHCNSLEYALCDWYYPDEPQYPYIAK*