NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138285_1004270

Scaffold Ga0138285_1004270


Overview

Basic Information
Taxon OID3300012758 Open in IMG/M
Scaffold IDGa0138285_1004270 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada - S_130626_E_mt (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1771
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000237Metagenome / Metatranscriptome1498Y
F049674Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0138285_10042701F000237N/AMVLHYFTP*YYLYLVKLHVLFCHES*DTDSGETTYEDKSGSYIS*FYDAFLKEIQDA*Y*STYIFIYFFMHH*NPGTVNYFFFER*NIAELDEIRFYGVAPH*YFRPLMGLLVVSPTHYEGLM*TGLFFFLLGFLPTFYNLYNTFNKYVCTIATQNSLIQTGAFILFMMSMYCVSSMLPCGRYYYEPEGGYVGNP*VKFSYQYIYLYLG*FVHHLDLLDHYIFQFSQTFVRKCSSYTTRRGELNTIVVEESKDSNDKNN*
Ga0138285_10042702F049674N/AMLEGRNFRKAL*GYHPSFQNIDIVTN*S*NLISLSSLVFSYLNFFVNRLLLPFSSVTSIIGFMLFICILMQLLSGFFLA*YYVAEPGLVVEFREEMFNDTRFGAEVFYMHVRGVDTLMILSYMHILKKST*
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