Scaffold Ga0157208_10028661

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157208_10028661

Scaffold Ga0157208_10028661

Overview

Basic Information
Taxon OID	3300012667 Open in IMG/M
Scaffold ID	Ga0157208_10028661 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	746
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Keswick, Ontario
Coordinates	Lat. (^o)	44.22385	Long. (^o)	-79.4212	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068461	Metagenome	124	Y
F100700	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_100286612	F068461	GAGG	MYKIFLTIALIAIFLFKQSHEAKKYKVEFENKLEFNSKKLHAVIAEVWNINN*
Ga0157208_100286614	F100700	N/A	MIIKLKQKSTLEITVETQVKEALKLRNGSVGGTKSLIDESNNYHFTITKREIKRIADAN

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