Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1001884 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1001884 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5910
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5910

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (30.77%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060610	Metagenome	132	Y
F065376	Metagenome	127	Y
F079784	Metagenome	115	N
F085061	Metagenome	111	Y
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100188411	F085061	GAGG	MSTLDNIGAEFANFNRFLDTIIDPREADNDSLEAKVKQAIIDAYSNGYHDGQKAIIDRFPRPSSQGGEEGGREYYESL*
Ga0157210_10018844	F079784	N/A	MARKPVSKPRQVLDIVLKYWRPTIGSLVILGSVFALIFKQITTETLAAIVAAMVAAGYIPKSSDNG*
Ga0157210_10018845	F060610	N/A	MDDGIDTVQITTSLDAACVIGIGCKLHTHHHVIHLEPQVVYQSMQKFTIFGKHYCTNQWGQTYELPSEKPIPEPTTMQQIYASDTIKPSTSAFLLAPKPEVKFIIKPRAEFREYQPTMDAPVMGFLLTFTIYLTAQWAWSSMPAWSNLYSELKQCLRYSS*
Ga0157210_10018848	F100269	N/A	MESVRTKIIYLAVLIVLLFLLLKSCADNVQSDYRLKHTIYEDSIVIASQKKIIAQKNSDAAKQAQQIAELEVKVKNASEVVRIETRTVIKTQIKLGDTVMIDKKPYIQLPKPFLKTTEWYTIGGMINRLGWLQIDSLVIPAKFTYAVGDTMRTGFFNKLLKKKDTVVRMRVDNPNVAITGMDNIYIKEDKKWHQTTAFKLGVGIIMGVAITSVGKK*
Ga0157210_10018849	F065376	N/A	MNAANIENISEFYKSLNSSQVLRAQGMIEGAPSIIEDKLSYDMSAESIKVANDAIKHIENNRKMVTIPLDQYKKSIMDVEREHIAPLKAYIEQRKAMMIDYSNELERKKAEADAKIAQDAANALKSASSSDVSDIFANFTDATTTTTLELDHTKNIRISKKAQIVREVDWATVLWTLMQAEMFDVAELLRKLPKAMEITNIDSIKGIEIVEHKTQVIR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1001884

Overview

Ecosystem & Geography

Associated Families

Sequences