Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1000810 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11159 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (20.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001775 | Metagenome / Metatranscriptome | 636 | Y |
F008081 | Metagenome / Metatranscriptome | 339 | Y |
F029443 | Metagenome / Metatranscriptome | 188 | Y |
F036704 | Metagenome | 169 | Y |
F044503 | Metagenome | 154 | Y |
F048316 | Metagenome / Metatranscriptome | 148 | Y |
F049637 | Metagenome / Metatranscriptome | 146 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100081012 | F008081 | N/A | MEESEILNPFGYGKASKVMDENRKPAEWWVDYIQFNEVVAENEFYVLFADGFLIKKGKSKFQSSQYLKGDRFKSFKEFHGQAG* |
Ga0157210_100081015 | F036704 | N/A | MWIEIDVMLAGNTMDWKELGLDVKHEFVRRMVRVDDIAYVQELVNDIQIMYFYDKTSCLLRGSYTEIRDELLHLDQEGQLD* |
Ga0157210_100081016 | F001775 | N/A | MNFTTDNQKIQIAILSFLAGVILAFVVFPKPEQETVYKFETKVESDTIYTRVVDTIYVPKTKIKTQVLRDTILLDFNPQISLFKTSIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIVQKAKGIYLGAGVNSLLDPSVKVSYLDNKYLFQYGYQPVTKIHSLGISKKLF* |
Ga0157210_10008102 | F044503 | N/A | MRRRNLTEYEKIVIFEMWQDRVPTKVIAMEMGVSYMCIYNQLKKRSLVG* |
Ga0157210_100081020 | F048316 | GGA | MKNFFTWAKGFLSEGGEASSKRLVGVLSGITLCSALFLNQNEPLVYSVAALSAAALGITAAEKIFKKTDKNENKPES* |
Ga0157210_100081022 | F049637 | N/A | MNILKSDELGVPSTFVAIFANVTAMAGLQFVNLVFTSVISILSIVYLVYKIRGEIKKSNGKG* |
Ga0157210_100081023 | F029443 | N/A | MTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVFWTVVRPSVYNGTTMRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNSYTFNTTPNAAIEFFQERFDDFTAGVSIAIQVTAPMPLNLCVIPTIA* |
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