NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1000810

Scaffold Ga0157210_1000810


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1000810 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11159
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F008081Metagenome / Metatranscriptome339Y
F029443Metagenome / Metatranscriptome188Y
F036704Metagenome169Y
F044503Metagenome154Y
F048316Metagenome / Metatranscriptome148Y
F049637Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100081012F008081N/AMEESEILNPFGYGKASKVMDENRKPAEWWVDYIQFNEVVAENEFYVLFADGFLIKKGKSKFQSSQYLKGDRFKSFKEFHGQAG*
Ga0157210_100081015F036704N/AMWIEIDVMLAGNTMDWKELGLDVKHEFVRRMVRVDDIAYVQELVNDIQIMYFYDKTSCLLRGSYTEIRDELLHLDQEGQLD*
Ga0157210_100081016F001775N/AMNFTTDNQKIQIAILSFLAGVILAFVVFPKPEQETVYKFETKVESDTIYTRVVDTIYVPKTKIKTQVLRDTILLDFNPQISLFKTSIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIVQKAKGIYLGAGVNSLLDPSVKVSYLDNKYLFQYGYQPVTKIHSLGISKKLF*
Ga0157210_10008102F044503N/AMRRRNLTEYEKIVIFEMWQDRVPTKVIAMEMGVSYMCIYNQLKKRSLVG*
Ga0157210_100081020F048316GGAMKNFFTWAKGFLSEGGEASSKRLVGVLSGITLCSALFLNQNEPLVYSVAALSAAALGITAAEKIFKKTDKNENKPES*
Ga0157210_100081022F049637N/AMNILKSDELGVPSTFVAIFANVTAMAGLQFVNLVFTSVISILSIVYLVYKIRGEIKKSNGKG*
Ga0157210_100081023F029443N/AMTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVFWTVVRPSVYNGTTMRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNSYTFNTTPNAAIEFFQERFDDFTAGVSIAIQVTAPMPLNLCVIPTIA*

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