Scaffold Ga0157210_1000810

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000810
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11159
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F044503	Metagenome	154	Y
F048316	Metagenome / Metatranscriptome	148	Y
F049637	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100081012	F008081	N/A	MEESEILNPFGYGKASKVMDENRKPAEWWVDYIQFNEVVAENEFYVLFADGFLIKKGKSKFQSSQYLKGDRFKSFKEFHGQAG*
Ga0157210_100081015	F036704	N/A	MWIEIDVMLAGNTMDWKELGLDVKHEFVRRMVRVDDIAYVQELVNDIQIMYFYDKTSCLLRGSYTEIRDELLHLDQEGQLD*
Ga0157210_100081016	F001775	N/A	MNFTTDNQKIQIAILSFLAGVILAFVVFPKPEQETVYKFETKVESDTIYTRVVDTIYVPKTKIKTQVLRDTILLDFNPQISLFKTSIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIVQKAKGIYLGAGVNSLLDPSVKVSYLDNKYLFQYGYQPVTKIHSLGISKKLF*
Ga0157210_10008102	F044503	N/A	MRRRNLTEYEKIVIFEMWQDRVPTKVIAMEMGVSYMCIYNQLKKRSLVG*
Ga0157210_100081020	F048316	GGA	MKNFFTWAKGFLSEGGEASSKRLVGVLSGITLCSALFLNQNEPLVYSVAALSAAALGITAAEKIFKKTDKNENKPES*
Ga0157210_100081022	F049637	N/A	MNILKSDELGVPSTFVAIFANVTAMAGLQFVNLVFTSVISILSIVYLVYKIRGEIKKSNGKG*
Ga0157210_100081023	F029443	N/A	MTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVFWTVVRPSVYNGTTMRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNSYTFNTTPNAAIEFFQERFDDFTAGVSIAIQVTAPMPLNLCVIPTIA*