Scaffold Ga0157210_1000585

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000585
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14433
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F006653	Metagenome / Metatranscriptome	367	Y
F016784	Metagenome / Metatranscriptome	244	Y
F020684	Metagenome	222	Y
F026830	Metagenome / Metatranscriptome	196	Y
F044984	Metagenome / Metatranscriptome	153	Y
F064708	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100058517	F026830	AGGA	MVKGETIMPVPGGEITTSEILVPAVEEVVEVSTTEEAEDDLPEL*
Ga0157210_100058519	F020684	N/A	MVLSKYALTVEEEATCVEVGYQRQKPYFGDPTKNINYSEGDLWETWQHVVCAGSELAFARMVGKNDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSTRDDDNLVYVLMSDGLCHKTRRVAPDWKGPEYTAIGWKLGAECKRDEWKYNDRTWYVPVAHLNPMESLVFNEQS*
Ga0157210_100058520	F006653	AGGAGG	MSEPELTNKYRDNLKIDALRADVDAIKVDLTNFVGALLQSGVVELVKDEEGNVIYKINKVVLVDESEVTS*
Ga0157210_100058526	F016784	AGGA	MEFNTYDYVEPEFKNVVATGEYAAHYWFEQGWKACRLAFLLHKQAEEAGAFRV*
Ga0157210_100058527	F064708	AGGAGG	MGKKLGRFYFYGGRNSGIGLGFNLDKHHITLDLLFWYAGFEYNGV*
Ga0157210_10005855	F000821	AGGAG	MNEEYLRAKFNLCLDQAEKDIQEQEIARAIKNLERANSAMARLFGLEDDKE*
Ga0157210_10005857	F001477	GGAGG	VSNVYTIHPIKSELVLFYEVVEAEGKNTWGGADPSQAIEWLVHSPVGSRILVSAWDSDEEDAHMVGQTLDITEIVKAASL*
Ga0157210_10005858	F044984	GGAGG	MTNEAERRVATAARKAIRDRNYRRARDRALARLAHLYPDTYKQLLEMEKIEDEKQGKTWISIDGTTNVPIVGIHTRATGADNLAYARDKGENQGNNGGEA*