Scaffold Ga0157210_1000577

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000577
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14531
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F003784	Metagenome	468	Y
F009331	Metagenome / Metatranscriptome	319	Y
F016642	Metagenome	245	N
F017972	Metagenome	237	Y
F020863	Metagenome	221	Y
F023834	Metagenome	208	Y
F026830	Metagenome / Metatranscriptome	196	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N
F087106	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100057711	F055450	GGAGG	MEDNKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDDQEGKTWLDLDGNTIPVVGVRIRTSDGRGEPSLKDHINEGTDEGNNGGEA*
Ga0157210_100057712	F017972	GGAGG	VRTKHLQLVTHEHSVTAEVKEGVSSPFGPVNPASTTLLAQKIYRANQEVRLMELLNSLENVVDSLNYKSFTVYDTLVTAIADLRVALSPIVTDADGTDTL*
Ga0157210_100057715	F003784	GGAGG	MYDDDRERVGHNATDLAAYGLSHFATGQSDTTDTDTPATNPLVDHAAVTGYRALGVSTEDLTSFIESFASLRANRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDQVLPDCD*
Ga0157210_100057717	F009331	AGGAG	MICDNCIKAGEENTSTHYKRASNWHDKCNDKGCVCQHKTGPGYVRRGDSKVPLMRTQSP*
Ga0157210_100057718	F016642	GAG	MLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGNNFEVRTVRTRDSIPFWNKDNGKIIVGTKIIDEDYYSQVEVYGYCNPEEYATSHYRDEAIDGWRVPVTELKEFK*
Ga0157210_100057719	F026830	N/A	MVKGETIMAIPGGEITTSEILVPVVEEVVEVSTTEEEADDSTPEQG*
Ga0157210_100057723	F087106	GGAGG	MAANENTKFQINYKLNDGTLINLYASDVKDLETGLNDLGMVATLIKATGADLGGSNATATAVQNIEAAFNTTPVAAPAPVVTEGQAPTCKHGNMAYRTGTSARGPWRAWMCAAPKGAADKCEPIFLR*
Ga0157210_100057728	F001094	AGGAG	MNKDKLIAMAGTYLRAGIASVIALWLAGVTDPKALASAGIAAVAGPLLKALDPNSTDFGRGSK*
Ga0157210_10005773	F020863	GGA	MQTTMEEIRNLVVTLEKLIQPLFEGDVVEDAPYESMKRPHLVLQEGSKTYGRAYRIHFTGGSKYGSGHWEPRGFSDYLGGTKAEAAHSLRKLIAGIHTGLMIAEKKEAKE*
Ga0157210_10005775	F026864	N/A	MKAKKIHTMTVQRGHKMSEQEKTAQFVFTVVIAPANKQYDVELWDFAGDEPKQLSTGGGSNWRTALGEALSKIELPTDKVEKTVNDLAKEGKENEGV*
Ga0157210_10005777	F023834	AGGAG	MTEPTVDYWIAKAELCRNLALMQSQDEEMEKEAGMNLMRMVYALSMVDTFNEGGSDE*
Ga0157210_10005779	F068766	AGGAG	MTTDNVVGFHPKNKLVNFYEIATEEGNAVWGGEDPHSAVEWLRRSPLNSRLLVSCWEAGEEDARLMIEPIDITKVVYAVMAGTQ*