Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1000510 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15915 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006060 | Metagenome / Metatranscriptome | 382 | Y |
F050890 | Metagenome | 144 | Y |
F068426 | Metagenome | 124 | Y |
F083677 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100051018 | F050890 | GAG | MSYDSDFERVYMVEFESGRVIHVGQYTVQDVLEYCADEHESEVIKSIYEEVYTGERY* |
Ga0157210_100051019 | F083677 | AGGA | MSHFDDMNVEELQSYFSDFHKDYYGFRPRFATPEQWRSRDWLIESINGIHDAFDAMKNTASGREQLRAEGWVIDESEFV* |
Ga0157210_100051026 | F006060 | GAGG | MLKFQNIATVGDIIRAYDFKPMAGRDDAFIEGVVIDANSNESGFSSYKIKVTVDKFKKYETKVTARNRVDQIAFVPHETSFMEFDFRVVNLSKV* |
Ga0157210_100051027 | F068426 | AGGA | MNTWDFVISELKSLQQGFEDNQAIAELFVEQKLLCGYNIIKSKDQVYTA* |
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