Scaffold Ga0157210_1000510

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000510
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15915
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F050890	Metagenome	144	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100051018	F050890	GAG	MSYDSDFERVYMVEFESGRVIHVGQYTVQDVLEYCADEHESEVIKSIYEEVYTGERY*
Ga0157210_100051019	F083677	AGGA	MSHFDDMNVEELQSYFSDFHKDYYGFRPRFATPEQWRSRDWLIESINGIHDAFDAMKNTASGREQLRAEGWVIDESEFV*
Ga0157210_100051026	F006060	GAGG	MLKFQNIATVGDIIRAYDFKPMAGRDDAFIEGVVIDANSNESGFSSYKIKVTVDKFKKYETKVTARNRVDQIAFVPHETSFMEFDFRVVNLSKV*
Ga0157210_100051027	F068426	AGGA	MNTWDFVISELKSLQQGFEDNQAIAELFVEQKLLCGYNIIKSKDQVYTA*