Scaffold Ga0157210_1000309

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000309
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22657
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (69.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013503	Metagenome	270	Y
F021045	Metagenome / Metatranscriptome	220	Y
F029367	Metagenome	188	N
F031035	Metagenome	183	Y
F066584	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100030910	F029367	AGGAG	MKPEHSDFDCMVCEHPDAPGVDLECYFDAQTTNLWFVYIGDALITDLLRDTIIQSLERGYVKACKEEADNNALDFALARYESKHYET*
Ga0157210_100030916	F013503	GGA	MTFAKPTPKNQETQFDEVQKLMCSVPGCGKRWSVHISGDRPKCSAHQWSKDPTEYRRPIIAKPVSQTVQQWYEKENF*
Ga0157210_100030928	F031035	GGA	MNKELINLRIQDLIARGKQLEQELQQINGALQQCQWTLAELEKEPENKPEE*
Ga0157210_100030939	F021045	N/A	MAGSSVLRTAGQTVALSVTSTAHAAVLIDDPTNEQVNYSSFLNTGASPIAVRWGPTDPGAPVFPVDGTNGDFVLPAGMTRPLIVATPVTPYYLTAKSNSATAGILYVTPSVYQS*
Ga0157210_10003099	F066584	N/A	MKLDKYTQHSIDGPYSAKPSLVDKVLFWLSGFVAGLIFTLLITGN*