Scaffold Ga0157210_1000149

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000149
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35738
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (64.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F052463	Metagenome	142	N
F056414	Metagenome	137	Y
F065772	Metagenome / Metatranscriptome	127	Y
F079788	Metagenome	115	Y
F098688	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100014913	F098688	AGGAG	MSKRDLALDSLTRICEIQQRLINQLIAMEQSSYARGYEDGMAAQAEVDIALNEIASGEPK
Ga0157210_100014915	F079788	GGAG	MDDDDIDSWATIALGLIASIFFFIGIVSVVAAACMAWGYYTYEPICGSIAALFTQECK*
Ga0157210_100014916	F027776	N/A	MVVCMMNPLEIEIKKTVFAHLPAVGDFGVIDRGDLATILHSACTEVALAGWARGADSVQRRLDQELEILRQELKAAQIELDYAKAN*
Ga0157210_100014917	F056414	AGG	MHFATAVCDAVINCDMMRPSSTNGANMKLTNYQRSQLKAAACFGCGQIDKVAASLQRENPEAFLRESELADRDFYHQPMAAHRSYVERFLPRRKSEYSQEQRQIMEQNHYLTTTYQIGVGA*
Ga0157210_100014923	F039985	AGGA	MLNLSNNSGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEAEKAAGDNFGKLPVIEYVNSTPEKVGKGNTRVPNFKLVSWVARPAGMNAEDGLEQWAEPEPTPVRKAKPAPAPVMDDEEFF*
Ga0157210_100014925	F044360	N/A	XVFEHSLMVEMETAKMEHEKVWGIDRVIDLVDAEFRRKVSAQRERIWEASQARDEERLEKAIKGMIAAYKALNRWATEAGIEQMPKIDCMEYKMADGSLMVIVRDKQMATWYDQFHKLPANRSVWTLEELEVVMNSKTLTHVREIKAAIPGTRMIPIQPQGSSGFEDMENDIDISKPFKGGKMFDTKAAERDKNERRK*
Ga0157210_100014926	F052463	GGAGG	MPGNPKVKADLALLEDLDAELVLSMFEEGRSKADICRGLGIGRRALDRWIDENDYHSIITRARVEAASHLACETLAIADSMDVDNAQRDVQRIRTRQWLAERWDRKTYGTDKAQSVNISIQGLRMEALRHVEVVEELSTDRMQKLSTEQVQLPND*
Ga0157210_100014935	F065772	N/A	MNMNDMPVTTDVAAQETMDDTELEAIIGQDLTDAVSYIDSDISPVRAMGTAYYRXXXXX