Scaffold Ga0157210_1000123

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000123
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40428
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (83.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F019798	Metagenome / Metatranscriptome	227	N
F025224	Metagenome / Metatranscriptome	202	Y
F028490	Metagenome / Metatranscriptome	191	Y
F098904	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100012311	F025224	N/A	MADATWMPGSLFDNIDKFANSLGYENAAVAIEFAMMPWKSPEERDTFITGITGQDPQGGTEKNYIKRNF*
Ga0157210_100012312	F028490	AGGAGG	MVSGGMRPGAPQNNPANVSGTGGAGQSGDYTGFAYGQNQEVNQQRVQGNQAVASTKTPTASANPYEGINMPQLGTLFDPTTRPDEPITAGVDFGPGPGSEVLPRGLMNSTANDENAKIVAQYLPDLAFAARSADAPDSFKRFVNYLIENNRSVI*
Ga0157210_100012313	F019798	AGG	MTTLVAIQGDGWSVLGCDSRLSDEHGRFQIAKTPKIVDNNGVLIAGCGSSRASNVLHYGYKQPKPTAQEDLNTYMTQKFIPAMRKSFVDAGIDMKEDGDVAQIDGGFLISVKGQVFSVSEDYSWDTDVRNVYVMGSGGDVALGALAALGVEKVKTINQAEAMVRKAIAIAIQYDNMCSEPIHIFKQFK*
Ga0157210_10001234	F001706	AGGAG	MGLHQIQTHAQYVEGCFGCKASTLELGTGDATRDISDKKWNSELQAYRDAKAQGIQPGGTSRAHVEAAYAASVTLGKAYNSETMPKAHQINKKTAEVMKEIGQV*
Ga0157210_100012347	F098904	AGGAG	MSNFFETFAASLLGIGAFYLVEAVYYDIKARIRGKQYTLFLEELEEELEH*
Ga0157210_100012360	F001599	AGGTGG	MAQETVSIAWCDNGMVDGKFMQGVTDVMLKSGINFTSTLRSQGNQIARQREKIIRYWYENNTSEWLLWVDSDVVISPEKFRLLWDNKDAAERPILTGVYFTTDTPEEPLMIPMPTIFNFAEAEDGVVGIKRVHPMPENQLIKVEAAGMGFVLMHRSVIDKIIEAVGNEIAIFNEIGTGKSFMGEDIYFFALVGKADIPVYCHTGAVVPHMKRFSFDEHYYKAFFGGVKEEKKSNLILPKQGLITPKKG*