Scaffold Ga0157210_1000039

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000039
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68403
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (76.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F015338	Metagenome / Metatranscriptome	255	Y
F019762	Metagenome / Metatranscriptome	228	Y
F023844	Metagenome / Metatranscriptome	208	Y
F076100	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100003938	F015338	AGG	MALKNGKPNPLNFFNLRRVEFCAPHFKYTTIDKYSPTLIRSLDKWIRQNLNGRYYIGQSLALDHTNTIVYVTSLGFETEKELSFFKIACPVLETR*
Ga0157210_100003949	F023844	GAGG	MIPQEPAQGVLLVKDWGTSKMYKAVCECGDNDCTHTIDVEAEDTGIVVTIYTTTRTNFWTKSRWHHIWRLLTKGYTDYETCIIMTKQVALNYASVLQLAIKDLEEFRKQNVKN*
Ga0157210_100003952	F001957	AGGA	MNSVDMANNLIFRAKHLTEFIVTTSVPEDFRFNGVVPFDMEIKDGEIAAKVYAVDFDEAVTRLNDFLETCK*
Ga0157210_100003956	F076100	AGGAG	MKYITNKFESIRFPVEEGLLEWLQENYPASKYYIKEI*
Ga0157210_100003959	F019762	AGGA	MKVLHESVAHTAREATIKENEGFRVRMEKHEVLSPKGTFSLDFIQESLKDGDVVDSQTYNFFMTKEEIEKLAHAITL*